PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10435735g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Dof | ||||||||
Protein Properties | Length: 466aa MW: 51860.6 Da PI: 5.7398 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.3e-38 | 26 | 85 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprCds+ tkfCyynny+++qPr+fCk C+ryWt GG++rnvPvG+grrknk+ MA_10435735g0010 26 TDKLLRCPRCDSSGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHL 85 67889****************************************************985 PP | |||||||
2 | Myb_DNA-binding | 32.5 | 2e-10 | 150 | 191 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE + l++a+ ++ + Wk +a+++g ++++ +c+sr+ + MA_10435735g0010 150 EWTDEETLVLLEAIFLHNDD-WKCVAQHVG-TKSEADCVSRFIQ 191 7****************988.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.3E-31 | 28 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.053 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-25 | 32 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS51293 | 17.176 | 146 | 197 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-8 | 147 | 195 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-6 | 147 | 189 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-11 | 147 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-7 | 150 | 192 | No hit | No description |
Pfam | PF00249 | 8.6E-10 | 150 | 192 | IPR001005 | SANT/Myb domain |
Pfam | PF16495 | 9.6E-21 | 375 | 452 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
KDEKGDETNK EEVEQNGHKD KLLRKTDKLL RCPRCDSSGT KFCYYNNYNV NQPRHFCKDC 60 QRYWTVGGTM RNVPVGAGRR KNKHLGTHYW HTMKSVGLTP ARTGASDAAH YSGFVLCPKC 120 YENGNYGLGL SASDFKRIEL KEVSQQKSVE WTDEETLVLL EAIFLHNDDW KCVAQHVGTK 180 SEADCVSRFI QLPFGEQYIG NISNEVSDRR SSNVTDENTV IKQVSSPKDR STQDLQDHVS 240 NDDKHTMDDV LGPPLKRRHL TPLADASNPI MGQVAFLSAM VGSHVAEAAA HAAIAALSEE 300 DPSASQVTST QEAECPNQKN GTGASGLEGS PKDFAIEDSK KESHRGTDQT TEDGDSLAGE 360 KEMTTPTVEM RAATATALGS AAVRAKLLAD QEDQDIENLF STVVDSQMKK LQERIQHFEE 420 FDIVTEKERS QVEHIKELLF ADRIRFIQNT IKSRFSGSKE KELEAA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110442 | 0.0 | BT110442.1 Picea glauca clone GQ03221_O13 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 8e-33 | cycling DOF factor 3 |