PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10435365g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26639.2 Da PI: 6.2569 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.7 | 1.8e-07 | 73 | 119 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E+ RR+r++s +L +llP + Kl+ e++++YI++L+ MA_10435365g0020 73 QTFAEQLRRKRMKSLCTQLESLLPAtP-----AKLDRCGLFEETINYIRKLE 119 5668*********************55.....9****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.601 | 68 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-5 | 68 | 123 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-11 | 69 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-10 | 70 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-5 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-4 | 74 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MASDWLFSHS LPDSRAVYSN VPQCDRQVDC RDTASRKRPS EVDLADLQEH NDLQENVWRD 60 VDRMMEFSSK ESQTFAEQLR RKRMKSLCTQ LESLLPATPA KLDRCGLFEE TINYIRKLEE 120 NIHRLKKKRE NLLAIQSGKT ANENTEIKVA VEFYGREAII SITSQRGPRQ MWKILEELES 180 HGLDVETSHL LPGEFFVLVF FHVNFRDYIS QDPAQIQTSL ECRLKLTY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085956 | 0.0 | EF085956.1 Picea sitchensis clone WS02715_B03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NX91 | 1e-164 | A9NX91_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-06 | bHLH family protein |