PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10435282g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 502aa    MW: 55116.1 Da    PI: 9.0886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10435282g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.5e-1079103226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C++++rtG+C yG +C+F+H+
  MA_10435282g0010  79 GQADCSHYMRTGYCGYGMNCRFNHP 103
                       5789********************9 PP
2zf-CCCH34.33.9e-11125147527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        C+f+++tGtCk+G++Ck++H++
  MA_10435282g0010 125 ACQFYMKTGTCKFGATCKYHHPR 147
                       7********************96 PP
3zf-CCCH35.81.3e-11168192327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C ++ rtG+CkyG++Ck+ H++
  MA_10435282g0010 168 EKECTYYIRTGYCKYGASCKYDHPQ 192
                       689********************97 PP
4zf-CCCH23.78.5e-08341366126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++++C+++ +tG Ck+G  C+++H+
  MA_10435282g0010 341 PGQPECQYYIKTGDCKFGFACRYHHP 366
                       5789*********************8 PP
5zf-CCCH28.42.9e-09389413327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C +++ +G+Ck+G++CkF H++
  MA_10435282g0010 389 QPTCTYYSHYGICKFGPTCKFDHPM 413
                       689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-577104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.42277105IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-879103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-681105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-483102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948120148IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-6122150IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4126148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6164193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915165193IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4167192IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8168192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5171190IPR000571Zinc finger, CCCH-type
SMARTSM003560.018340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155340368IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4342366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5384412IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4386413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033386414IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6389413IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MIDGIYRASV PQQRPASGAR GHRVTDVRAD NWLPYHAGLN STKSAAESMK ESMRRMTLQP  60
QDSRSRMNGY SESYPERSGQ ADCSHYMRTG YCGYGMNCRF NHPTNVKLQA ARNKGELPER  120
VGHNACQFYM KTGTCKFGAT CKYHHPRDRL GAGQVQLNMI GLPMRMGEKE CTYYIRTGYC  180
KYGASCKYDH PQPAALGTLV PVSGSPLYAT IRPPIAPASA TQYSPGLPTW PSPRTPYRQS  240
PHMPGALPYM PVMYSPHQGM LTASGWGTYQ SPASPLTSPE SQQQLRRMNI MYNSTQPNGL  300
SVGGMQGLIT PFAQGSSAAV GHQPGHFQPN RTQTETYPER PGQPECQYYI KTGDCKFGFA  360
CRYHHPHERV SQSSTCVLSP IGLPLRPTQP TCTYYSHYGI CKFGPTCKFD HPMAGLSCSP  420
SASSLSEIPV APYPRGSSPT TTHIQSPSEP PLEIAKSRDQ PLREPTSSKQ DPETVVSGNT  480
RENVSTYSDA AIASRSAQSA LC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770770.0EF677077.1 Picea sitchensis clone WS02761_F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMQ00.0B8LMQ0_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.34e-98C3H family protein