PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10433064g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 348aa    MW: 39210.9 Da    PI: 10.5073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10433064g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.2e-17134221194
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k l++s+v++  +l lp +f++++   ++e+++++lede+g++ +  +i  +++    l++GW++F  +++L++gD +vF+l++ ++f+ +
  MA_10433064g0010 134 FIKSLVRSHVSSCFWLGLPTDFCRKYL--PPEDTKMVLEDEKGEECDTVFIAVRTG----LSGGWRGFSLDHKLDDGDALVFELVEPKRFKVH 220
                       89************************5..346789***************776666....************************988888555 PP

                       E CS
                B3  94 v 94 
                       v
  MA_10433064g0010 221 V 221
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-20128224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-23128223IPR015300DNA-binding pseudobarrel domain
CDDcd100178.75E-25132223No hitNo description
SMARTSM010191.6E-20134225IPR003340B3 DNA binding domain
PfamPF023625.4E-15134221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069134225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGESKSYEEA RQQRLEENKK RMEDLGLAKL CKGLQAVASG SKSQTRPVMK PRRLKEEEGL  60
PLERRCSSRV SRLPTPIYRE VDDFPRSRKS YGRKQNAKNP NLHMVKLASY EARMQAIQNA  120
EKIVEDLGSK HPCFIKSLVR SHVSSCFWLG LPTDFCRKYL PPEDTKMVLE DEKGEECDTV  180
FIAVRTGLSG GWRGFSLDHK LDDGDALVFE LVEPKRFKVH VTKAEDFEPV SKKKSPTKNG  240
DLQKESSATA TKKPKKKPSK GKRGGKKPPL QKETANSKAK IKQNLSKSGK GKSTMLETEK  300
ENKRKITVPA SAPLDSNEAL SQLAAEVNNG SVNREETNTR KTKRRRVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024981962.14e-71putative B3 domain-containing protein At5g58280 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-46B3 family protein