PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10431881g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 544aa    MW: 63216.6 Da    PI: 9.9137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10431881g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.6e-12481521447
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT++E   l+ +++++G++ Wk+I++ +g  ++++++k++w++ 
  MA_10431881g0010 481 WTEDEINALKILHAEHGNN-WKKISEFLG--KSRYHVKDKWRSI 521
                       *****************99.********8..9*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1403475IPR001005SANT/Myb domain
SuperFamilySSF466895.11E-10453533IPR009057Homeodomain-like
PROSITE profilePS5129413.955474526IPR017930Myb domain
SMARTSM007173.3E-8477524IPR001005SANT/Myb domain
PfamPF139213.2E-10481539No hitNo description
CDDcd001671.19E-5481522No hitNo description
Gene3DG3DSA:1.10.10.601.1E-8481540IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDTGMEKKKN KSTKVSSDKN FEEENGAEDF QAIDDELQVS KEKKKKKKKK KKANGDSMGE  60
NFQELNENKE KPLKKKNKKK TDGDETEAEG KISEKTDIYH EDVISKKTRR YFNGDGKEGF  120
EEIPSKYSGN EEARADKELA EKRKKKKKKK RSGEADIEEK VEITKEQEIK EEAPEEITRI  180
RDLEITEKAS KKKKKKKRNE GDGIEVVKNL EERIEDRTAK EEENTDKSHK KKKKKRAEGN  240
GNEAVESSEE GFEDGTAKEE DNTEKSPKKR KKSSKGEVYD NVEEKEKRKK KTKKSNKWES  300
YDNVEVKEKR KKGKKSREGE VYDNGEEKER RTKKRKRGEL VSDDANRGKS SPAERSTPSK  360
KQKKVSFSDQ VEVFVVGDTK NEEKGKDFEN STAASGEDSE LVWGKRFSKA EDNAIRNAVS  420
AYIKERGYDE EKGLEMILNC MKNSEVRNCW KQIAASLPSR PLMSVYFRAH VLYERSEERG  480
WTEDEINALK ILHAEHGNNW KKISEFLGKS RYHVKDKWRS IKRTGLNSGH WFREEYQKLF  540
DLVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14251KKKKKKKKKK
2142150RKKKKKKKR
3229235KKKKKKR
4264270KSPKKRK
5266272PKKRKKS
6267271KKRKK
7269290RKKSSKGEVYDNVEEKEKRKKK
8329335RRTKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1034470.0BT103447.1 Picea glauca clone GQ0253_E16 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.14e-42MYB_related family protein