PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10431176g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 786aa MW: 85853.5 Da PI: 6.9006 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.2 | 5.5e-17 | 342 | 391 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq MA_10431176g0010 342 RSKHSATEQRRRSKINDRFQMLRDLVPHS----DQKRDKASFLLEVIEYIQVLQ 391 889*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-23 | 337 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-18 | 339 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.66 | 340 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-14 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.84E-15 | 342 | 395 | No hit | No description |
SMART | SM00353 | 1.1E-12 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MALSPRANAT AGSPKEIVTL SVSQATVCPP SSLHPGPVRS SDLSYSAALN SSFGFPFQDF 60 RTQRIPPPNS HCMELPHPQL PFEGSKPPHD FLSLYGDSSS NRVEHRSSQA NSTHLKTQDF 120 LQPLERGGKN SNIKGLEVSS AEASAATPAS SVEHVLPGGI GTYTISHISG YSQINGKSEI 180 PVVHVNVAET KPEVTRAASS TNYGGGAFTL WEERIRAVDG NRTSDGLAAT DFSKEYLEKS 240 GYWPAVRAKT DLSFPAKTAF SLSTVETSQQ PLPSSSKQRL QTGQGFVEMI KSIKAISEDD 300 EDEEDEYVDR SRESRKECSS QKGDPPPKAD ARSNDQKANT PRSKHSATEQ RRRSKINDRF 360 QMLRDLVPHS DQKRDKASFL LEVIEYIQVL QEKVRKYETT EQSWNQERMK TMVWDLCKKS 420 PGHGEVPVDG SRIVVGTLSD SKQNNEVGDP ARSKVTPNAL HYENGTAGTD MHPTSQNLMQ 480 PNKSTPVIPG CAPSYKEKEN IGAFNKSIPP TLSMQQCVYS PFGRSYIHST HPKGQATSEI 540 HSLQSIQGIT PTCIPANAYN FDKEKDGDSA APVQLSHFQG NTVTVAKTTS GHESQRSELR 600 SSQLSPIQQY SSQNGGILLK DEAADTKSAS KSENQHSSAY FNSSPRSSQY VPQSEAELAS 660 RQPQPRSSSP DQHRASEPRL AASEQEELVI QSGVINVSSV YSQGLLDTLT QALQNSGLDL 720 SQANISVQID LGRRGGTSGA TTNTKEHSHN HEESSQNHQL QGQSRAADTS SECEQPQKRP 780 KIERDV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112545 | 0.0 | BT112545.1 Picea glauca clone GQ03317_C05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020522638.1 | 1e-121 | transcription factor BIM2 isoform X2 | ||||
TrEMBL | W1P7A6 | 1e-104 | W1P7A6_AMBTC; Uncharacterized protein | ||||
STRING | ERN05752 | 1e-105 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1360 | 17 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-57 | bHLH family protein |