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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10431132g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 144aa MW: 16583.9 Da PI: 8.2149 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 179.7 | 2.2e-55 | 1 | 144 | 230 | 374 |
GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 +vk+l P+vv++veqe+++n+++F+ rfle+l+yy+a+f+sl+ +lpres+er++vE+++l+r+ivnv+acegaer+erhe ++kWr+r+++a MA_10431132g0020 1 MVKGLAPTVVTLVEQESNTNTSRFFPRFLETLSYYTAMFESLDLTLPRESKERVSVEQHCLARDIVNVIACEGAERVERHEPFGKWRSRFTMA 93 69******************************************************************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GFk+ +ls+++++++k l+ ++++ yrv e+++ l+lgW +r L+++SaW+ MA_10431132g0020 94 GFKSHALSSRVNSTIKVALESYNQN-YRVVEKDEVLYLGWLGRDLFVASAWK 144 ***********************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.33 | 1 | 125 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.5E-53 | 1 | 144 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MVKGLAPTVV TLVEQESNTN TSRFFPRFLE TLSYYTAMFE SLDLTLPRES KERVSVEQHC 60 LARDIVNVIA CEGAERVERH EPFGKWRSRF TMAGFKSHAL SSRVNSTIKV ALESYNQNYR 120 VVEKDEVLYL GWLGRDLFVA SAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-21 | 1 | 143 | 237 | 378 | Protein SCARECROW |
5b3h_A | 2e-21 | 1 | 143 | 236 | 377 | Protein SCARECROW |
5b3h_D | 2e-21 | 1 | 143 | 236 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT100787 | 0.0 | BT100787.1 Picea glauca clone GQ0044_C22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116878.1 | 1e-73 | scarecrow-like protein 21 | ||||
Refseq | XP_029116879.1 | 1e-73 | scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 3e-69 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | E0Z8K8 | 1e-88 | E0Z8K8_PICSI; Phytochrome A-like protein (Fragment) | ||||
STRING | GSMUA_AchrUn_randomP18920_001 | 8e-72 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14896 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-71 | GRAS family protein |
Publications ? help Back to Top | |||
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