PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10431052g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 204aa    MW: 22825.7 Da    PI: 10.2242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10431052g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08143191348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lv++v  +G g+W+ I +        Rt  ++k++w+++l
  MA_10431052g0010 143 SWTLHEVVKLVEGVSHFGVGRWSDIKKLAFsssVYRTSVDLKDKWRNLL 191
                       7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.789136195IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-12138196IPR009057Homeodomain-like
SMARTSM007173.1E-8140193IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-15142196IPR009057Homeodomain-like
CDDcd116603.41E-19142192No hitNo description
PfamPF002493.9E-6143191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
KNKSSGRAAN LVTKELHVQP AQYSGDTADM KQIVPFGSSQ KVDLQQSKSS GRDANLVKQS  60
LCVPAAHYSS DTANMKQIVP FGSSQNIVHD NKEIKEQALV SVPPDRNYVL EPSNSDSLDD  120
ISYDYLKTIR TAKGGIRRKH HRSWTLHEVV KLVEGVSHFG VGRWSDIKKL AFSSSVYRTS  180
VDLKDKWRNL LRASYAQLQT NKQV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1110410.0BT111041.1 Picea glauca clone GQ03231_M08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526470.15e-44uncharacterized protein LOC18422773 isoform X2
TrEMBLW1NHA92e-42W1NHA9_AMBTC; Uncharacterized protein
STRINGERM948613e-43(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.29e-29TRF-like 6