PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430620g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 119aa    MW: 13578.2 Da    PI: 4.4492
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430620g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10851344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       W++eE +++ +a + + ++   +W+ +a+++g g+ + ++k ++
  MA_10430620g0010  8 EWSAEENKIFENALAIYDKDtpdRWHNVASMVG-GKNPDEVKRHY 51
                      6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.659459IPR017884SANT domain
SMARTSM007172.8E-9557IPR001005SANT/Myb domain
PfamPF002491.6E-7851IPR001005SANT/Myb domain
CDDcd001673.08E-8855No hitNo description
SuperFamilySSF466891.57E-12862IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-5855IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MCSRSLVEWS AEENKIFENA LAIYDKDTPD RWHNVASMVG GKNPDEVKRH YEILLEDLNC  60
IEAGKVPIPN YTFDITTKDE VPVHYKDGGE DGQVTVSGSN DTVVWTNEEQ RLLMHLKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-299711173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1155190.0BT115519.1 Picea glauca clone GQ03619_M05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970206.18e-32PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC13e-32D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010254802.12e-30(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-31RAD-like 6