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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10429213g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 338aa MW: 38566 Da PI: 6.9986 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.3 | 2.3e-14 | 77 | 114 | 6 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ++ r+ tf kR++g+ KK eELS+LC++e++++ f+++ MA_10429213g0020 77 DTSRNMTFMKRKKGLKKKVEELSILCGVEACMVCFGPQ 114 57899******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-4 | 63 | 123 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-15 | 77 | 114 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.306 | 77 | 112 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-17 | 77 | 165 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MQPSTSAFSP ASQSINLMAL MALTTAYPPI SLLGSSIVFW QLPAQRGCYR ALDELALTFA 60 PVMPRLRGQP RRGDGXDTSR NMTFMKRKKG LKKKVEELSI LCGVEACMVC FGPQMDQQTA 120 SDHPDVWPGK SKALEIVERY RSLSKEEQEK KKLDNSNFLE QRIKKLKVEL SIKRKENREL 180 EMESVYPWDS CLNFFTDEQL KDLVDYIDIR LETVHDRINF LSRHEREIYN GAESDMVPLR 240 ELECIARQPM EDGGSYNFMM PYQSGGESLN SVVGQVKPYL GLEGHYKALM SSCGTVAMDY 300 YSKVNPLFIA ALKDYHAPNS KEESSRVLRY QEFMGLLS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT124567 | 0.0 | BT124567.1 Picea sitchensis clone WS0475_C11 unknown mRNA. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-16 | AGAMOUS-like 80 |