PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10428586g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 734aa    MW: 83030 Da    PI: 10.0353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10428586g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.9e-09622670348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT  E  +lv++v + G g+W+ I r       +Rt  ++k++w+++l
  MA_10428586g0010 622 AWTLSEVMKLVEGVSRCGAGRWSEIKRLAFsayGHRTSVDLKDKWRNLL 670
                       7***************************999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.977615674IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-12616674IPR009057Homeodomain-like
SuperFamilySSF466899.33E-16617674IPR009057Homeodomain-like
SMARTSM007171.4E-8619672IPR001005SANT/Myb domain
CDDcd116603.54E-18621671No hitNo description
PfamPF002491.9E-6622670IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MREEGRGGEE REGREDEEGR AGEGRWDRAR RGRFKRRRRW TSRVGTRGDL RASLQAEGLQ  60
GEDLERWGHG LTGHFDGVRY LAYVTNFFRF KIVELPEEHG SLSEPEDAEA ERRKLHAKLE  120
FIEVMLQRVN EEERLRMASG IPGHSSRFRL NNTSSNNSKW DYCRGSPDSV SHVLSADAPF  180
HESPSPVNSG SVDEHNIEKN FDGYPPPQVE VIAKPDSNAV NNGICLDNLS IRELHEAFRR  240
TFGRETSVKD KQWLKRRISM GLNNPRDVAN NNVVSENKLS SHKKLEKDFS IESRHNIDQP  300
VHSFPTMQPI KTKVAAGSAF QSFGSKQPHG RIGSTAPFME VEKVTNDFDD EFVGHGMRAG  360
KRLRKPKAEY GENEVVVGAE RMARKTMRKP KSEYIDYDED FDVEKTAGKR VRKPKVEYGE  420
YDEVLGSEKT AGKRMRKPTR RYIEELSEEE PRAYSGRTVP AVRDSGHGHS PQKSRIRPPF  480
LNGVEGIALV TRQDSLGGSG IQVPFVSRVR RGRPRKNCTS LLKYNPNGMA AKLVKKALSV  540
RAARYDGDGA DMKWRTRVPS EPVEQSVDEN SQNDENMLLA VTTEDQSISD PLDYDMEEDN  600
SDDYVATVPT AKGGTRRKHH RAWTLSEVMK LVEGVSRCGA GRWSEIKRLA FSAYGHRTSV  660
DLKDKWRNLL RASYAQLQSN KEGRSQRKHA SVPIPAPILV RVRELASMQS RSVCTPNSSS  720
VSRSGRTVHK KLPV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1509515RRGRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1113990.0BT111399.1 Picea glauca clone GQ03237_B11 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-59TRF-like 6