PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10428315g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 507aa    MW: 55847.7 Da    PI: 8.5387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10428315g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06262283223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C++Cgk F+r  n + H+r H
  MA_10428315g0010 262 FCEICGKGFKRDANVRMHMRAH 283
                       6*******************99 PP
2zf-C2H211.90.00071370391122
                       EEETTTTEEESSHHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                       y+C++C+k Fs   +Lk+H + 
  MA_10428315g0010 370 YTCQKCNKQFSVVGDLKTHGKH 391
                       9******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-5258285No hitNo description
SMARTSM003550.0099261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863261288IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5263287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-5368415No hitNo description
PROSITE profilePS5015710.014370396IPR007087Zinc finger, C2H2
SMARTSM0035513370394IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280372394IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDSARAGHQG FKTADLRFDP DGIHERGFFL QGSNPIRSAE YHASERFRER QLQALSNLHQ  60
ERAAGNGGDR PTDFDSPLPT SASEGMLQSN SNNLGAWPAM GAGLSSGAQA EMDPNVLLSN  120
LSVLQQQAQQ LEAFVQEGRH DQSASASGFI SSILYELIVT AESVLFSVQN RESAKLVSAD  180
VQPGPDPGAC VEIQAENRAP PLGLVFGKLP SPNGASVVRF ADEKSPSAIK AEGEEEEAPP  240
GDRFYKIIEI NEGNILAEHT HFCEICGKGF KRDANVRMHM RAHGDEYKTI QALMSRPPAA  300
SSSSSSPRAR RYSCPFESCR RNKNHRKFKL LKSITSLRNH YKRSXXXXKL LKSITSLRNH  360
YKRSHCPKIY TCQKCNKQFS VVGDLKTHGK HCGHNPWRCS CGSTFTRKDK LFSHVILFQG  420
HKPLLPDHEL VFPPAPKRHK ATSNGWATTG QSAGYSDDAN LREFLAGDLA GLVDNNFQGY  480
GDGDDDNLLS FRAMGMGTTI IYCLNPK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1229451e-135BT122945.1 Picea sitchensis clone WS0463_G20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9S20.0D5A9S2_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-63C2H2 family protein