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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10427464g0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | SBP | ||||||||
Protein Properties | Length: 448aa MW: 49701.3 Da PI: 10.4521 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.7 | 7.7e-39 | 217 | 294 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhr+hkvCe+hska+++lv l+qrfCqqCsrfh l+efDe+krsCrrrL +hn+rrrk+q MA_10427464g0040 217 MCQVDDCRTDLTSAKDYHRHHKVCETHSKASKALVGSLMQRFCQQCSRFHPLQEFDEGKRSCRRRLVGHNRRRRKTQR 294 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.5E-33 | 210 | 279 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.248 | 215 | 292 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-36 | 216 | 295 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.8E-29 | 218 | 291 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MIQARSVPLL RKSTAAKSIG IQRVSAFTFC LLKMDGKAGP QVASPFFQHQ LLSGPLYEPP 60 LAAKRCVEPT NSSWTRTNWQ HQQQQKTLPV YEVSKPNWNA NLWDWDSVRF VAKPVNLGNH 120 HEPSNRNIKP QVSSKILRLG SNDAGLNVVN ASSLPDQKRK LDEPVKPFLP SKDSSENDPG 180 NLTLKLGGSS YSYADDTNAS RQNKRVRSGS SGSSYPMCQV DDCRTDLTSA KDYHRHHKVC 240 ETHSKASKAL VGSLMQRFCQ QCSRFHPLQE FDEGKRSCRR RLVGHNRRRR KTQRDEALPW 300 GLLAASQENG GFGNLDIVSL VSILSRLQGN NNSIEKPSGQ SSLDGDQVIQ LLNRMNSVFP 360 SSQKVVAPSQ GFDLNIAQSI QSPRADIPKE NGNPSGGLTA ELLAILSALT GPSHDALALL 420 RNSLXXXXKW FFKVLFSMAL ARKRHELA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-33 | 209 | 291 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849915.1 | 1e-92 | squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A0C9S2R6 | 1e-157 | A0A0C9S2R6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18703_5262 transcribed RNA sequence | ||||
STRING | ERN11496 | 6e-92 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 9e-55 | squamosa promoter binding protein-like 14 |