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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10427358g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 463aa MW: 53796.7 Da PI: 7.3471 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.8 | 1.9e-20 | 93 | 164 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt+ e+l+Li++r+e+e r++r+ +k+ lW+e++ +r+++f r ++qC++kwe+l +k ++eg k+r++ MA_10427358g0010 93 WTRVETLKLIKLRTELEPRFSRSGRKMELWDEIAVSLRKEQFFRDAQQCRDKWEKLMAGFKDVREGLKDRND 164 *******************************************************************99854 PP | |||||||
2 | trihelix | 62.4 | 1e-19 | 366 | 444 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W++ evl+Li++r em+ r+ +++++++lWee ++ + ++g++r kqC+ekw++l yk + +g++++ ++ +yf +l MA_10427358g0010 366 WKRGEVLQLIKLRGEMDGRFANSARRAALWEELADMLGRQGIKRDGKQCREKWDKLMAAYKDVMDGKREE--GD---LSYFVEL 444 *****************************************************************99984..33...4566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.037 | 85 | 149 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 88 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-4 | 89 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.45E-22 | 91 | 156 | No hit | No description |
Pfam | PF13837 | 6.0E-14 | 91 | 163 | No hit | No description |
PROSITE profile | PS50090 | 8.188 | 358 | 422 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-5 | 359 | 422 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.045 | 362 | 424 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.8E-16 | 364 | 446 | No hit | No description |
CDD | cd12203 | 9.41E-21 | 364 | 428 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MEEPLQIINS SPIQQQHDQD DDDHGHGHEE EVIPHALLPP PGDTCIVPYI MPVSTSTAEK 60 HPPQQTNIAF NGPETEEDDK KRDREHKKRS KNWTRVETLK LIKLRTELEP RFSRSGRKME 120 LWDEIAVSLR KEQFFRDAQQ CRDKWEKLMA GFKDVREGLK DRNDNGFKDV REGLKDRNDN 180 PYYDDLHPLL SGKCLRKENL KKEGDSAHNE NLNSRHFDIS GREMYENRDT DEDDDDMLLE 240 KPYFKKRKRC GKYVPVTDIE AVKTLLEAVI SRQQRFFKEL LDSLERKEQI REQLRQERDE 300 KWRAEERAHR NVFNNAMILL AQKLLGERVA VSAAETAMGN SVGGGVVSTS DTLRQGSGPK 360 KRSKNWKRGE VLQLIKLRGE MDGRFANSAR RAALWEELAD MLGRQGIKRD GKQCREKWDK 420 LMAAYKDVMD GKREEGDLSY FVELRAIVGG RPDEVKVQTM LMP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117143 | 0.0 | BT117143.1 Picea glauca clone GQ03813_L16 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395857.1 | 1e-137 | trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A0D6QU72 | 0.0 | A0A0D6QU72_ARACU; Uncharacterized protein | ||||
STRING | PP1S224_109V6.1 | 1e-136 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10636 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 2e-16 | Trihelix family protein |