PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_10426628g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 98aa MW: 10746.1 Da PI: 10.4318

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10426628g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4.1e-10	64	90	1	27
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 +g WT+eEde+l +av + g++Wk+I MA_10426628g0010 64 KGGWTEEEDEILRRAVDAHKGKNWKKI 90 688***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.603	59	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-9	61	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.36E-6	61	92	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-7	64	90	IPR001005	SANT/Myb domain
CDD	cd00167	1.80E-6	67	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MSGHATTSFD KRKMAGVKNN RTDCSKDKKS GASSSSLSDC CESALQRLPP VQGRTSGPTR 60 RSSKGGWTEE EDEILRRAVD AHKGKNWKKI GLFSYTPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395732.1	6e-18	transcription factor MYB3R-1-like isoform X1
Refseq	XP_024395733.1	6e-18	transcription factor MYB3R-1-like isoform X2
TrEMBL	A0A118J4F8	3e-18	A0A118J4F8_CYNCS; Homeodomain-like protein
TrEMBL	A0A176VVE1	4e-18	A0A176VVE1_MARPO; Uncharacterized protein
TrEMBL	A0A2R6X4U0	4e-18	A0A2R6X4U0_MARPO; Uncharacterized protein
STRING	EFJ27664	1e-16	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	8e-16	myb domain protein 3r-4