PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426425g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 534aa    MW: 60310.7 Da    PI: 6.3014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426425g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-054463221
                      EETTTTEEESSHHHHHHHHH CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                      +C+ Cgk Fs++  L  H+r
  MA_10426425g0010 44 VCEECGKEFSSWKALFGHMR 63
                      6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-74367IPR007087Zinc finger, C2H2
SMARTSM003550.00274365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6164370IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-74465No hitNo description
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-44566IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.57E-7278305No hitNo description
PROSITE profilePS501579.681283310IPR007087Zinc finger, C2H2
PfamPF139125.9E-9283307IPR007087Zinc finger, C2H2
SMARTSM003550.89283305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285305IPR007087Zinc finger, C2H2
PfamPF139123.0E-11378402IPR007087Zinc finger, C2H2
SMARTSM003551379401IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162379401IPR007087Zinc finger, C2H2
PROSITE patternPS000280381401IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MYTLRRNPKR SWRFADQDYS FAFGGADGSG AKRFGSTFLR DSRVCEECGK EFSSWKALFG  60
HMRCHSDRAW RSHQNKECID EEQQLENLHE DPKENWEIAT ENSKQNWVAY GENPKENWES  120
SNWVAYGENP KENWESSSEE EALDSGSETE NAGTASGEDQ SSFHRWMKGK RSKRPRSAHN  180
HTQPKNSEQN NEEEDMANCL MMLANGSCFQ GTRNLDGSQG GAAYSATSGS ADLKIPSTEE  240
DIASELRKSS TSRVKVKGVS INGVEKLESE AYVKDVCKKV PMYECKTCRK FFHTYQALGG  300
HRASHKKVKG CFARITVHEE NETLEEEIMD EELLSVADHH LSEDFCKPPR KYQVKDSGNE  360
RKEEIAETPS ASKKLPRVHE CSICHRIFTS GQALGGHKRC HLIVSEASST VTSTKQQAEL  420
KPTVKEELLD LNMPAPVEDD NGIQVSNNIR STFLGSSVVN SLRPADADPV NKVSPSYIQP  480
WWIARNQKQG LFMYKGHTNH LTQEDEAESK LGSKNGMDNV QDLIQNRARP WLEV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-22C2H2-like zinc finger protein