PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MA_1026888g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 75aa MW: 8697.16 Da PI: 9.7451

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_1026888g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.6	8.3e-14	4	63	1	55
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C+++C l+p++ ++q++++ +++k++G++ +++l+++ p++ r+ MA_1026888g0010 4 SCNGCRVLRKGCSDSCELRPCLqwirtFESQENATMFLAKFYGRTGLMNLINSGPDHLRP 63 6*******************8888777899*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.439	3	75	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-10	4	63	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MRVSCNGCRV LRKGCSDSCE LRPCLQWIRT FESQENATMF LAKFYGRTGL MNLINSGPDH 60 LRPSKYMFPN SYKIK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797833.1	4e-35	LOB domain-containing protein 41-like
Refseq	XP_021838468.1	4e-35	LOB domain-containing protein 40-like
Refseq	XP_028070422.1	3e-35	LOB domain-containing protein 41-like
Swissprot	Q9CA30	2e-33	LBD42_ARATH; LOB domain-containing protein 42
Swissprot	Q9M886	2e-33	LBD41_ARATH; LOB domain-containing protein 41
Swissprot	Q9ZW96	1e-33	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A0K9REJ1	5e-34	A0A0K9REJ1_SPIOL; Uncharacterized protein
STRING	XP_009607764.1	2e-34	(Nicotiana tomentosiformis)
STRING	XP_008797833.1	1e-34	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	6e-36	LOB domain-containing protein 40