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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_102199g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 525aa MW: 59694.6 Da PI: 6.6921 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 144 | 188 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+++++da k++G W+ I +++g ++++ q++s+ qk+ MA_102199g0010 144 RERWTEDEHKKFLDALKLYGRS-WRHIEEHIG-TKSAVQIRSHAQKF 188 78******************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-15 | 138 | 194 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.89 | 139 | 193 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-8 | 141 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-15 | 142 | 191 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.1E-12 | 143 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 144 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-9 | 146 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MLPLGSRFFS PSFPAQQISL KVTYIGAGWN FCNRDGGELE ETIPTHCVQL YTEDKPSQEI 60 ERKSKTYDKA DQDLTISAVR TFAVSCSVRG DVIETRYELI VYHHFDTGCF ETFKYWRIEE 120 GETHFSIDEP FSKVRKPYTI TKQRERWTED EHKKFLDALK LYGRSWRHIE EHIGTKSAVQ 180 IRSHAQKFFT KLEKGASTGT SSTMTYQYLE IPPPRPKRKP GHPYPKKTGV IDRGGDFSIL 240 EEDSRTRGCK VSERECSKLT ELAQHNSKSR SLDKPKMTQG TSQPSRMSTS LKLFGQTLVV 300 QNSFTDDFLF TSVENEAICS EIYPENKDAP CEDEILDCRR IRKDTFSPEE SETDTFQSVN 360 NSTGKSTIHK SSVFSNTNWS PALLNSCHSS SSENENIQCS YPQVLRDGSL EDGLQQKPEV 420 PDIKCKYTHQ SQQEDEKQRN KDKIGLEAQP GNIVLQSNPK PTPLMEGCSF KMASASQSNY 480 ADPLKEEYKI RGKNRTYSGA GFVPYKGCQK DGQYPGESDA EECNL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085534 | 0.0 | EF085534.1 Picea sitchensis clone WS02728_K17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NW27 | 0.0 | A9NW27_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 3e-32 | MYB_related family protein |