PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10163039g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YC | ||||||||
Protein Properties | Length: 235aa MW: 27365.3 Da PI: 6.5635 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 168.5 | 8.1e-53 | 62 | 166 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ d MA_10163039g0010 62 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLD 154 89*****99888999****************************************************************************** PP NF-YC 91 flvdivprdelk 102 fl+divprde+k MA_10163039g0010 155 FLLDIVPRDEVK 166 *********875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.51E-31 | 48 | 156 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-36 | 78 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.1E-21 | 84 | 147 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEGKYPHLQS SPSPSVSHGP SSLMHNSIFQ QQQPQMPMQH HQQQLQGSMQ PHLHYMQIQK 60 QQLQMFWQQQ MQEMEQIAEF KQHQLPLARI KKIMKSDEDV KMISAEAPVL FSKACELFIL 120 ELTLRSWLHT EENKRRTLQR NDIAGAISRG DVLDFLLDIV PRDEVKDEEY GGHWPGIPHA 180 ESMSYGGIHF PLMHAQPYHH NLNPDVMTAQ QTMSQQLMSQ QPLMPDQQLM YQPPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-50 | 70 | 162 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085083 | 0.0 | EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369382.1 | 7e-77 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9FMV5 | 2e-60 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A9NUT0 | 1e-170 | A9NUT0_PICSI; Uncharacterized protein | ||||
STRING | PP1S315_9V6.3 | 3e-76 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 3e-53 | nuclear factor Y, subunit C4 |