PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 190aa MW: 21401.9 Da PI: 4.8932

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10062104g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.7	1.6e-14	24	72	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kG r +k +g+Wv+eIr p+ + +r++lg+++t+e+Aa a++ a +l+g MA_10062104g0010 24 FKGNRMRK-WGKWVSEIRMPN----StRRIWLGSYDTPEKAACAYDFAVYCLRG 72 67778788.********83....35*******************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.4E-27	22	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.047	23	80	IPR001471	AP2/ERF domain
CDD	cd00018	1.41E-25	23	82	No hit	No description
SuperFamily	SSF54171	1.37E-19	23	82	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-28	23	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-7	24	35	IPR001471	AP2/ERF domain
Pfam	PF00847	2.6E-7	25	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-7	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MAKPSQNQNG HNRPENRPLK SRQFKGNRMR KWGKWVSEIR MPNSTRRIWL GSYDTPEKAA 60 CAYDFAVYCL RGSKAKFNFP HSPPEIPCAS SLSPPQIQAA AAEYAEEFPL RSKDAAFSSS 120 SSEAKCGNDG EDISAFWDSV LEDVDNGEFL TLQDFPPLDV TLQDFPPLDV PLEDFGVLYQ 180 MTENWGRGVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-13	20	80	2	63	ATERF1
3gcc_A	2e-13	20	80	2	63	ATERF1
5wx9_A	4e-13	23	81	14	73	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9S7L5	5e-35	ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBL	B8LPP6	8e-77	B8LPP6_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	5e-34	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HY, et al. ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element. New Phytol., 2016. 211(2): p. 599-613 [PMID:26974851] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]