PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043182
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 224aa    MW: 24248.3 Da    PI: 9.6491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043182genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.91.9e-211969155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr ++ +gr++AeIrdps+   ++r++lg+f+++eeAa+a++aa+ +l+g
  Lus10043182 19 PKYRGVRKRP-WGRYAAEIRDPSK---KTRVWLGTFDSPEEAARAYDAAAVALRG 69
                 79********.**********965...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-151969IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-222078IPR016177DNA-binding domain
PROSITE profilePS5103223.6962077IPR001471AP2/ERF domain
SMARTSM003802.1E-372083IPR001471AP2/ERF domain
CDDcd000183.72E-202077No hitNo description
Gene3DG3DSA:3.30.730.101.1E-312077IPR001471AP2/ERF domain
PRINTSPR003671.1E-102132IPR001471AP2/ERF domain
PRINTSPR003671.1E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MARGRPTEAP PPAALAAEPK YRGVRKRPWG RYAAEIRDPS KKTRVWLGTF DSPEEAARAY  60
DAAAVALRGP RAKPNFPFPC SSHRPIPSPF HGNPIRHVDF RLIEKSRMMP ASSSLSSTVE  120
SSSGPRSREQ AGGGICVSLT ASSSGRKRRQ SKDRRSPAGD FQSDCDSSSS VVDDGERAVA  180
AEDAVSAMTR EALLLFDLNF PPPPMDELAF GREDPLRPTD LCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2116811076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8299700.0EU829970.1 Linum usitatissimum clone LU0014D11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0V0HV082e-44A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGLus100431821e-159(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-23ERF domain protein 12