PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042996
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 261aa    MW: 28429.7 Da    PI: 7.7124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042996genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-2099149255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp++ g  +r++lg+f+ta eAaka+++a+  l+g
  Lus10042996  99 HYRGVRRRP-WGKYAAEIRDPTKKG--ARVWLGTFDTAIEAAKAYDNAAFHLRG 149
                  7********.**********97744..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-3298158IPR001471AP2/ERF domain
SMARTSM003802.0E-3699163IPR001471AP2/ERF domain
PROSITE profilePS5103224.15799157IPR001471AP2/ERF domain
PfamPF008472.2E-1399149IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2299158IPR016177DNA-binding domain
CDDcd000185.52E-3099157No hitNo description
PRINTSPR003671.8E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.8E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAFPHPEAST LDNIRQYLLA DCPASMDSYI SHLNLVKTEI QDNTHYSSKP SPSSSSSSSS  60
LSQRRKPNMI SNISIPRPSP AVDPTRIQSD SVPAEEDRHY RGVRRRPWGK YAAEIRDPTK  120
KGARVWLGTF DTAIEAAKAY DNAAFHLRGS RAILNFPLEA GRNSPASDSG SLSVLTEDDS  180
RKRKIGEIED ARREEDDVKK VAKGESPNPA GQGGAGADPV PLTPSSWKDF FDSESNSKGI  240
FSVPPLSPLS PMGYSWLMVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2996158264ATERF1
3gcc_A5e-2996158264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042996
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8301671e-110EU830167.1 Linum usitatissimum clone LU0009A05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021687038.12e-72ethylene-responsive transcription factor ERF105-like
TrEMBLB9NBQ91e-68B9NBQ9_POPTR; ERF family protein
STRINGLus100429960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-58ERF family protein