PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042907
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 242aa    MW: 26642.2 Da    PI: 8.88
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042907genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18113162355
          AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrdp   + k +r++lg+++ +e+Aa a+++a+ +++g
  Lus10042907 113 YRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTYDAPEGAALAYDRAAYQIRG 162
                  9*******.**********9...4345***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-22112171IPR016177DNA-binding domain
SMARTSM003802.1E-34112176IPR001471AP2/ERF domain
PROSITE profilePS5103223.604112170IPR001471AP2/ERF domain
PfamPF008477.2E-13113162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-31113171IPR001471AP2/ERF domain
PRINTSPR003672.7E-13113124IPR001471AP2/ERF domain
CDDcd000182.77E-29113172No hitNo description
PRINTSPR003672.7E-13152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQPTSFKIKK MYSETNLTTT AVDLSLLDWI LLETEEVSTT ATTSSCSETF SFTNLLELPV  60
LPADKDDMVA EIPHEVLRWK EYTPYDVVSV KEEQHHVAET APQKKKERTK MLYRGVRRRP  120
WGKYAAEIRD PNKKGARVWL GTYDAPEGAA LAYDRAAYQI RGSKAKLNFP HLVGTRGFHK  180
VAARPSPGPA ATSLQTTTVA SSKLSVTSSS LTPSTEFGGG NVDDFGMSLL ASFMLNSQSF  240
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-26113170360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103118KKKERTKMLYRGVRRR
2104119KKERTKMLYRGVRRRP
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042907
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508240.17e-39PREDICTED: ethylene-responsive transcription factor 13-like isoform X1
SwissprotQ8L9K13e-38ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A178W1M81e-35A0A178W1M8_ARATH; ERF13
STRINGLus100429071e-179(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-39ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]