PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042806
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 655aa    MW: 72045.1 Da    PI: 6.8037
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042806genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.7e-2986170187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+laL+++r++m+ ++r++++k+plW++vs+km e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t++yf+qlea
  Lus10042806  86 RWPRQETLALLKIRTDMDATFRDASAKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKH--EGKTYRYFEQLEA 170
                  8********************************************************************964..4557*******85 PP
2trihelix994e-31479563186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k ev aLi +r++++ +++++  k+plWee s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+
  Lus10042806 479 RWPKVEVEALISLRTNLDFKYEENGPKGPLWEETSAGMKRLGYNRSSKRCKEKWENINKYFKKVKESNRKR-PEVSKTCPYFHQLD 563
                  8*********************************************************************8.9***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.63279143IPR017877Myb-like domain
SMARTSM007178.6E-483145IPR001005SANT/Myb domain
CDDcd122039.23E-2685150No hitNo description
PfamPF138371.4E-1885170No hitNo description
SMARTSM007171.2476538IPR001005SANT/Myb domain
PROSITE profilePS500906.702478536IPR017877Myb-like domain
PfamPF138371.1E-20478564No hitNo description
CDDcd122031.53E-25478543No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MLGDTTTSVS SSVNPGGDTT QHHHHSQCQP HHNPNPPPTS SSSAAIVGGF VQEGLGEAGA  60
AGARGGGAGH VGSSSGGEED RFGGNRWPRQ ETLALLKIRT DMDATFRDAS AKGPLWDDVS  120
RKMGELGYHR SAKKCKEKFE NVYKYHKRTK DGRVGKHEGK TYRYFEQLEA FDTHPPGGAP  180
PPPPPQQLIH PSNPPQTHPG AVVAPHITTV PSTTVVPSII APPPPAAINI ATIAAPPFVS  240
SSPPPQLTSF PVYHPPSFST FSAADLVSNS TSSASTSSDV EIHGRHKRKR KWKDFFGRLM  300
TEVVQKQEEM QRKFLEAIEK REQERLSREE SWRHQEMSRI NREREILTQE RSIAAAKDAA  360
VMSFLQKLSD QQAPGAPPLQ LPQSIAQTIP PPPSPITPQP PTTTAPPQAS VSAPPPQSQS  420
APNPVQAAPS PAPSMMTPSP AHQHHHILQQ SGIQLQMTTG MSRMDSETDR NFLPASSSRW  480
PKVEVEALIS LRTNLDFKYE ENGPKGPLWE ETSAGMKRLG YNRSSKRCKE KWENINKYFK  540
KVKESNRKRP EVSKTCPYFH QLDVLYREKL EGGGGSSGQM RPEMNSIPRM VQPEQQWPPQ  600
PPPPAASYPR DPVTQDMDRE DHDDEEEDYE DEDEDEDEDE GGGGGYELVS SKPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473053.11e-178trihelix transcription factor GT-2
TrEMBLA0A067H7R91e-177A0A067H7R9_CITSI; Uncharacterized protein
STRINGLus100428060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-54Trihelix family protein