PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042805
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 426aa    MW: 48544.1 Da    PI: 6.7243
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042805genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.94.2e-26111207185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt++++++Li+a+++++e+  +++           +kk++W++vsk+m+er f++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  Lus10042805 111 KWTDKMIKLLITAVSYIGEDGASDCvgamrrkfvvlQKKGKWKSVSKVMAEREFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 207
                  7**********************9999999999999**********************************************569999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-22109234No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGNTSQGGI FSGGLPFGGL DLQGSLRIHH QAQHPHAVNH HQGSSAHASI REGFPLTMDH  60
HSLSMADYKK LDTRKNPLSD DDEPSYTEEG GADGHNESNR GKKGSPWQRV KWTDKMIKLL  120
ITAVSYIGED GASDCVGAMR RKFVVLQKKG KWKSVSKVMA EREFHVSPQQ CEDKFNDLNK  180
RYKKLNDMLG RGTSCQVVEN PALLDVIDYL SEKEKNDVRK ILSSKHLFYE EMCSYHNGNR  240
LHLPHDPALQ RSLQLALRSR DDHENDGTKR HDNDDLDEDD PDTDGHDEYE ENFAPSGNLG  300
GSSLKRLRQD HVCVTGSSQD VHKGSHSHPT IAPMVDMNQA SPESARQAMG QKQWMESRTL  360
QLEEQRLQIQ VEILELGKQR FKWERFSQKR DHELEKFRMQ NERMKLENER MALELKHKEM  420
GADFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451284.10.0uncharacterized protein LOC7467820
TrEMBLA0A2K2BEQ00.0A0A2K2BEQ0_POPTR; Uncharacterized protein
STRINGLus100428050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-156sequence-specific DNA binding transcription factors