PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 571aa MW: 63078.5 Da PI: 4.7058 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 427.7 | 9.4e-131 | 202 | 570 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ecA+a+s g+ + a+a++++l+++ s +gdp R+aay++e+Laa++a+s++ lykal+++e + ss++laa+++++e++P++kf++++aN Lus10042776 202 RLLFECANAISVGNIQGASAIITELRQMGSIQGDPASRIAAYMVEGLAAKIASSGKYLYKALKCKEPP---SSDRLAAMQILFEICPCFKFGFMAANG 296 79*****************************************************************9...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 a+ +a++ge++vHiiDfdi+qG Q+++L+q+La++ ++ p +R+Tgv++pes+ l+ +g rL+k+Ae+l+vpfef++ va++++ +++++L++ Lus10042776 297 AMIDAFKGEKKVHIIDFDINQGNQYITLIQTLANQGGKLPYIRLTGVDDPESVqrPIGGLSIIGLRLEKLAEALKVPFEFRA-VASKTALVSPSMLEC 393 ***************************************************99878899***********************.7************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +pgEal+Vn+++qlh+++desvs+ +erd++L++vks++Pk+v++veq++++n+++F++rf++a +yysa+++sl+++lpres++ri+vEr++l+r+i Lus10042776 394 RPGEALVVNFAFQLHHIPDESVSTVNERDQLLRTVKSMNPKLVTLVEQDVNTNTTPFVQRFVNAYDYYSAVYESLDVTLPRESQDRINVERQCLARDI 491 ************************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vn+v+ceg+er+er e ++kWr+r+++aGFkp ++ ++++ ++ ++++++++ ++++ee g+l +gW++r+L+++SaWr Lus10042776 492 VNIVSCEGEERIERYEVAGKWRARMMMAGFKPRGMGPNVVEMIRKVIKEYGVR-FTLKEEMGALQFGWEERSLIVASAWR 570 ***************************************************99.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.065 | 174 | 551 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-128 | 202 | 570 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MSLVNPTSAA PYGNHKLYPL KGSTEKSGLS AQMFGPDRNA TIYTSDSCSS ESYEKYFLDS 60 PSGEVIQPSV SGNSGDSSYQ LRTGSGFGSS IAAEVPYNAY VVNSSKPDFL DVAPSPDTEA 120 YDETELNIKL QELERALLDD DGQDDEAYIN NQSMEIESEW SDQMQNPMLY DSPKESSSMD 180 SNLSSIGSCK EVCQLSPRTP KRLLFECANA ISVGNIQGAS AIITELRQMG SIQGDPASRI 240 AAYMVEGLAA KIASSGKYLY KALKCKEPPS SDRLAAMQIL FEICPCFKFG FMAANGAMID 300 AFKGEKKVHI IDFDINQGNQ YITLIQTLAN QGGKLPYIRL TGVDDPESVQ RPIGGLSIIG 360 LRLEKLAEAL KVPFEFRAVA SKTALVSPSM LECRPGEALV VNFAFQLHHI PDESVSTVNE 420 RDQLLRTVKS MNPKLVTLVE QDVNTNTTPF VQRFVNAYDY YSAVYESLDV TLPRESQDRI 480 NVERQCLARD IVNIVSCEGE ERIERYEVAG KWRARMMMAG FKPRGMGPNV VEMIRKVIKE 540 YGVRFTLKEE MGALQFGWEE RSLIVASAWR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-57 | 206 | 569 | 25 | 378 | Protein SCARECROW |
5b3h_A | 2e-57 | 206 | 569 | 24 | 377 | Protein SCARECROW |
5b3h_D | 2e-57 | 206 | 569 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042776 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302201.2 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024450876.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024450877.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2K2BEX1 | 0.0 | A0A2K2BEX1_POPTR; Uncharacterized protein | ||||
STRING | Lus10042776 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4988 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10042776 |
Publications ? help Back to Top | |||
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