PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10042776

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 571aa MW: 63078.5 Da PI: 4.7058

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10042776	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	427.7	9.4e-131	202	570	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ecA+a+s g+ + a+a++++l+++ s +gdp R+aay++e+Laa++a+s++ lykal+++e + ss++laa+++++e++P++kf++++aN Lus10042776 202 RLLFECANAISVGNIQGASAIITELRQMGSIQGDPASRIAAYMVEGLAAKIASSGKYLYKALKCKEPP---SSDRLAAMQILFEICPCFKFGFMAANG 296 79***************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 a+ +a++ge++vHiiDfdi+qG Q+++L+q+La++ ++ p +R+Tgv++pes+ l+ +g rL+k+Ae+l+vpfef++ va++++ +++++L++ Lus10042776 297 AMIDAFKGEKKVHIIDFDINQGNQYITLIQTLANQGGKLPYIRLTGVDDPESVqrPIGGLSIIGLRLEKLAEALKVPFEFRA-VASKTALVSPSMLEC 393 ***********************************************99878899*******************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +pgEal+Vn+++qlh+++desvs+ +erd++L++vks++Pk+v++veq++++n+++F++rf++a +yysa+++sl+++lpres++ri+vEr++l+r+i Lus10042776 394 RPGEALVVNFAFQLHHIPDESVSTVNERDQLLRTVKSMNPKLVTLVEQDVNTNTTPFVQRFVNAYDYYSAVYESLDVTLPRESQDRINVERQCLARDI 491 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vn+v+ceg+er+er e ++kWr+r+++aGFkp ++ ++++ ++ ++++++++ ++++ee g+l +gW++r+L+++SaWr Lus10042776 492 VNIVSCEGEERIERYEVAGKWRARMMMAGFKPRGMGPNVVEMIRKVIKEYGVR-FTLKEEMGALQFGWEERSLIVASAWR 570 ***********************************************99.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.065	174	551	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-128	202	570	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MSLVNPTSAA PYGNHKLYPL KGSTEKSGLS AQMFGPDRNA TIYTSDSCSS ESYEKYFLDS 60 PSGEVIQPSV SGNSGDSSYQ LRTGSGFGSS IAAEVPYNAY VVNSSKPDFL DVAPSPDTEA 120 YDETELNIKL QELERALLDD DGQDDEAYIN NQSMEIESEW SDQMQNPMLY DSPKESSSMD 180 SNLSSIGSCK EVCQLSPRTP KRLLFECANA ISVGNIQGAS AIITELRQMG SIQGDPASRI 240 AAYMVEGLAA KIASSGKYLY KALKCKEPPS SDRLAAMQIL FEICPCFKFG FMAANGAMID 300 AFKGEKKVHI IDFDINQGNQ YITLIQTLAN QGGKLPYIRL TGVDDPESVQ RPIGGLSIIG 360 LRLEKLAEAL KVPFEFRAVA SKTALVSPSM LECRPGEALV VNFAFQLHHI PDESVSTVNE 420 RDQLLRTVKS MNPKLVTLVE QDVNTNTTPF VQRFVNAYDY YSAVYESLDV TLPRESQDRI 480 NVERQCLARD IVNIVSCEGE ERIERYEVAG KWRARMMMAG FKPRGMGPNV VEMIRKVIKE 540 YGVRFTLKEE MGALQFGWEE RSLIVASAWR *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MSLVNPTSAA PYGNHKLYPL KGSTEKSGLS AQMFGPDRNA TIYTSDSCSS ESYEKYFLDS  60
PSGEVIQPSV SGNSGDSSYQ LRTGSGFGSS IAAEVPYNAY VVNSSKPDFL DVAPSPDTEA  120
YDETELNIKL QELERALLDD DGQDDEAYIN NQSMEIESEW SDQMQNPMLY DSPKESSSMD  180
SNLSSIGSCK EVCQLSPRTP KRLLFECANA ISVGNIQGAS AIITELRQMG SIQGDPASRI  240
AAYMVEGLAA KIASSGKYLY KALKCKEPPS SDRLAAMQIL FEICPCFKFG FMAANGAMID  300
AFKGEKKVHI IDFDINQGNQ YITLIQTLAN QGGKLPYIRL TGVDDPESVQ RPIGGLSIIG  360
LRLEKLAEAL KVPFEFRAVA SKTALVSPSM LECRPGEALV VNFAFQLHHI PDESVSTVNE  420
RDQLLRTVKS MNPKLVTLVE QDVNTNTTPF VQRFVNAYDY YSAVYESLDV TLPRESQDRI  480
NVERQCLARD IVNIVSCEGE ERIERYEVAG KWRARMMMAG FKPRGMGPNV VEMIRKVIKE  540
YGVRFTLKEE MGALQFGWEE RSLIVASAWR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-57	206	569	25	378	Protein SCARECROW
5b3h_A	2e-57	206	569	24	377	Protein SCARECROW
5b3h_D	2e-57	206	569	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10042776

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302201.2	0.0	scarecrow-like protein 1
Refseq	XP_024450876.1	0.0	scarecrow-like protein 1
Refseq	XP_024450877.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A2K2BEX1	0.0	A0A2K2BEX1_POPTR; Uncharacterized protein
STRING	Lus10042776	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4988	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	Lus10042776

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]