PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10042647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28602.1 Da PI: 8.4713 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 164 | 204 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Lus10042647 164 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 204 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 156 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.16E-12 | 157 | 209 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-14 | 159 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.9E-14 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-6 | 165 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MERYSSSSSS TDDHQDHQTT TTTMPMESML MMMAEKQHLP VVDDYLYSFD CGGATNPTNA 60 TTINPFNTNN PLPSTTLSFS TTSQDQQSIS WRDLMMTGES GNDNVVNGRG MGSNNSNNKA 120 SMAAMREMIF RIAAMQPIHI DPESVKPPKR RNVRISKDPQ SVAARHRRER ISEKIRILQR 180 LVPGGTKMDT ASMLDEAIHY VKFLKNQVQS LERNAPHRPP APVAAGIGFP VPVTNGHWKS 240 GYNQQPPAHQ DISGYGDA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10042647 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028102968.1 | 1e-68 | transcription factor HEC2-like | ||||
TrEMBL | A0A2G9G6X7 | 1e-66 | A0A2G9G6X7_9LAMI; Uncharacterized protein | ||||
TrEMBL | E0CPU4 | 2e-66 | E0CPU4_VITVI; Uncharacterized protein | ||||
STRING | Lus10042647 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67060.1 | 1e-45 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10042647 |