|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Lus10042572 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
Family |
bHLH |
Protein Properties |
Length: 174aa MW: 19734.1 Da PI: 10.4516 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lus10042572 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 45.3 | 1.5e-14 | 1 | 44 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++ErrRR+++N++f Lr+l+P +K++Ka+iL A+eY+k+L+
Lus10042572 1 MAERRRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLR 44
58*********************8.....8*****************95 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MAERRRREKL NERFIVLRSL VPFVTKMDKA SILGDAIEYL KQLRKKIQDL EAKNRQFEMD 60 PQRIGSGSEN KKMRTAAEAK RGKTPTKAKE TSVEVSIIEK DALLELECEH REGLLLDMML 120 KLREMRIEVT TVQSSLSDGV LVAELRAKVK ENGGGKKVSI VEVKRAINGI IQW*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_B | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_E | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_F | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_G | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_I | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_M | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
5gnj_N | 7e-15 | 2 | 57 | 12 | 67 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 2 | 7 | ERRRRE |
2 | 3 | 8 | RRRREK |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |