PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042395
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 535aa    MW: 60194.5 Da    PI: 4.9998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042395genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.8e-08265307754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N ++  Lr l+P  +       l Ka+i   A+e++k+L
  Lus10042395 265 QAERRRRKRLNGRLYDLRALVPIiS------DLKKASIIGDAIEFVKEL 307
                  68*********************66......799*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-81099IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088812.963258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-13262320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11265320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6265307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0017272310No hitNo description
CDDcd048730.00167399462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MRQILDGIFQ HPTTKSCELL SHLPTTLSLD ESGNIHAEAL ISNFPRWLNF SSSSSGSTLL  60
EETVGTRVLI PVPGGLIELF VAKQVPEDQQ VIEIVKSEFS SVMMMNHQEA VESADFSVSI  120
MSTEEIFHPQ SYDFSVDRLH GMCSSPMNLL QQFSYSNEEN NLTTKSNNNN NSSLFFEGGE  180
EQNGGNNNNE MHQNHHHEEV EFGESTVGKE QQQGNDHDKE GIKQEMNGRS DSISDCSDQN  240
ADDDQQQYSN KYRRKNGKPE AKNLQAERRR RKRLNGRLYD LRALVPIISD LKKASIIGDA  300
IEFVKELKRQ AKELEEELEA NSDDEEISRN SIYNNNNNNN SMAATHVVLG QNVGMNEPDS  360
TVSGLAKVLN QESEINHEKG QQMEVQVEVA QIDGNGFFVK VFCEHRAGGF VRLLEALDSL  420
GLEVTNANVT SCKSLVSNVF RVQKKDSEMV QAEYVRDSLL ELTREPLPRT WTEIQVKASE  480
NGNGIMDHHH HQHHLHPNNY SHHQVMQQNG HLMNSDHLYP ATAPQLNMSF SNLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252272RRKNGKPEAKNLQAERRRRKR
2266273ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042395
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672400.11e-152transcription factor ABORTED MICROSPORES
TrEMBLB9S5L31e-151B9S5L3_RICCO; Transcription factor, putative
STRINGLus100423950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-78bHLH family protein