PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042349
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 385aa    MW: 42569.1 Da    PI: 7.2772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042349genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.9e-08186234432
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...................... CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas....................k 32 
                  +h+ +Er RR++iN ++  L+el+P +s                    +
  Lus10042349 186 NHSLAERARREKINARMKLLQELVPGCSkscrhslelnttitckleliS 234
                  79************************87677766666666666666663 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-6180269No hitNo description
PROSITE profilePS5088813.071182264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-12182210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12182211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-5188270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-12244286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12244283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEQLLSAAPD ARSNETALDS VQFGDDIRHL ITAPTENSSS FTALLGLPPN QAMELLHSPP  60
DSTFKTSPDG PKLYQPPHHF NADLLTFPAN AALNISPETN SNSRAKLMQK TVKGEPADTV  120
SYLINSSQPL ASDSTVVDNQ RPGAKRKERE KKGRSFSKKS KCDKSEDGEK LPFVHVRARR  180
GQATDNHSLA ERARREKINA RMKLLQELVP GCSKSCRHSL ELNTTITCKL ELISESQTKC  240
TKLCMQISGT ALVLDEIINH VQSLQRQVEV LSMELSAVNP RIDFNMDSMM AVASGSLMDS  300
NFPAVMMPIM WPEIQENGSR QQYQQQWNSD AVHQPTWGKE DGHSNFMSRE NSLLSYVSSA  360
NSGRNEFILP LVASMSTGMK ICTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621235.11e-122transcription factor bHLH48-like
SwissprotQ3EAI12e-82BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A2C9VDG61e-121A0A2C9VDG6_MANES; Uncharacterized protein
STRINGLus100423490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.12e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]