PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 385aa MW: 42569.1 Da PI: 7.2772 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.5 | 9.9e-08 | 186 | 234 | 4 | 32 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...................... CS HLH 4 ahnerErrRRdriNsafeeLrellPkas....................k 32 +h+ +Er RR++iN ++ L+el+P +s + Lus10042349 186 NHSLAERARREKINARMKLLQELVPGCSkscrhslelnttitckleliS 234 79************************87677766666666666666663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.09E-6 | 180 | 269 | No hit | No description |
PROSITE profile | PS50888 | 13.071 | 182 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-12 | 182 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-12 | 182 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-5 | 186 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-5 | 188 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-12 | 244 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-12 | 244 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEQLLSAAPD ARSNETALDS VQFGDDIRHL ITAPTENSSS FTALLGLPPN QAMELLHSPP 60 DSTFKTSPDG PKLYQPPHHF NADLLTFPAN AALNISPETN SNSRAKLMQK TVKGEPADTV 120 SYLINSSQPL ASDSTVVDNQ RPGAKRKERE KKGRSFSKKS KCDKSEDGEK LPFVHVRARR 180 GQATDNHSLA ERARREKINA RMKLLQELVP GCSKSCRHSL ELNTTITCKL ELISESQTKC 240 TKLCMQISGT ALVLDEIINH VQSLQRQVEV LSMELSAVNP RIDFNMDSMM AVASGSLMDS 300 NFPAVMMPIM WPEIQENGSR QQYQQQWNSD AVHQPTWGKE DGHSNFMSRE NSLLSYVSSA 360 NSGRNEFILP LVASMSTGMK ICTY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042349 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621235.1 | 1e-122 | transcription factor bHLH48-like | ||||
Swissprot | Q3EAI1 | 2e-82 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A2C9VDG6 | 1e-121 | A0A2C9VDG6_MANES; Uncharacterized protein | ||||
STRING | Lus10042349 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.1 | 2e-80 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10042349 |
Publications ? help Back to Top | |||
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