PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10042211

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 363aa MW: 39610 Da PI: 7.0133

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10042211	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	1e-09	184	232	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Lus10042211 184 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQ 232 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-15	180	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	182	245	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.7E-8	184	238	No hit	No description
SuperFamily	SSF57959	3.31E-10	184	235	No hit	No description
Pfam	PF00170	1.8E-8	184	232	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.12E-23	185	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDAHDPIPKP NPNAAPSSSN NHHPPPRPSP AALLSAANSN SSSFVNARPF APPHGGHHHR 60 RALSETNFRF PDDMAKMMMM DLSPSDPMAS VGGGSSTCSQ EEIGSEDDLF STYIDVDKLT 120 GGAGNCADQS NGVNRNSGEK SSRPATKHRH SNSVDGSAAF GEIMDAKKAM PPEKLAELWN 180 LDPKRAKRIL ANRQSAARSK ERKARYILEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST 240 ENTELKLRLQ AMEQQAQLRD ALNEALKKEL EKLKVATGEP ISPSESFNFG MHQFPFTPSN 300 MFSHPQQAMP SQNMHQTNNH QLSDAMQNES LARFQGLDIS SKGQQSLVKS EEYSISASET 360 SS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDAHDPIPKP NPNAAPSSSN NHHPPPRPSP AALLSAANSN SSSFVNARPF APPHGGHHHR  60
RALSETNFRF PDDMAKMMMM DLSPSDPMAS VGGGSSTCSQ EEIGSEDDLF STYIDVDKLT  120
GGAGNCADQS NGVNRNSGEK SSRPATKHRH SNSVDGSAAF GEIMDAKKAM PPEKLAELWN  180
LDPKRAKRIL ANRQSAARSK ERKARYILEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST  240
ENTELKLRLQ AMEQQAQLRD ALNEALKKEL EKLKVATGEP ISPSESFNFG MHQFPFTPSN  300
MFSHPQQAMP SQNMHQTNNH QLSDAMQNES LARFQGLDIS SKGQQSLVKS EEYSISASET  360
SS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10042211

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017082.1	1e-145	PREDICTED: transcription factor RF2b
Swissprot	Q6S4P4	1e-91	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A061GYW1	1e-143	A0A061GYW1_THECC; Basic-leucine zipper transcription factor family protein
STRING	Lus10042211	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-80	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10042211

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]