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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 318aa MW: 35601.9 Da PI: 4.4182 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 101 | 154 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Lus10042180 101 KKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARWK 154 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.3 | 3.7e-42 | 100 | 192 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE+sFe ++kLep+rKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++++d+l+++ + L ke+++L++e+++ Lus10042180 100 EKKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQSSFDTLQADYAGLLKEKNHLKSEIDS 192 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.68E-20 | 80 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.589 | 96 | 156 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-20 | 99 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.40E-18 | 101 | 157 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 101 | 154 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-20 | 103 | 163 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.9E-6 | 127 | 136 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 131 | 154 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.9E-6 | 136 | 152 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-14 | 156 | 198 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MSAMANDVGG GGGGGTCVTN LPPALHRNNK RSHQSASQPL DSFFLPGSSP SFLGPRSIVR 60 FDDASQVNGS SSSSSKPFFC SFELDENGDD DLDEYFRQPE KKRRLSVEQV QFLEKSFEVD 120 NKLEPDRKVQ LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDTLQSSFD TLQADYAGLL 180 KEKNHLKSEI DSLTEKLQQK ERAKAFSDMS QGQMEKPAQP CKQEDISSAR SDIFDSESPH 240 YTDGVHSSLL EAGDSSYVFE PDQSSDLSSQ DEEDNLSRNL LPAAASYVLF PKLEDEDDYS 300 DPSASFEDNA FWSSWPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 156 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042180 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321530.2 | 1e-133 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A9PHH0 | 1e-131 | A9PHH0_POPTR; HD-ZIP family protein | ||||
STRING | Lus10042180 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-46 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10042180 |