PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 181aa MW: 20462.7 Da PI: 10.3622 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24 | 6.9e-08 | 12 | 62 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 + +E++RR ++ +L +llP+ +k+++k ls + + +Av YI +L Lus10042128 12 KTVEKNRRILMKGLCLKLVSLLPPtYFKTSHKHlLSQPDQVDHAVSYITQL 62 679*********************999*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-7 | 11 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-8 | 12 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-4 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MNKLQCQVVD RKTVEKNRRI LMKGLCLKLV SLLPPTYFKT SHKHLLSQPD QVDHAVSYIT 60 QLSQRIEKLK QKKEELAAAT SSRDHRARID DRDQGPRKVV VEVRESGSSI EVTLISGVQK 120 SFMLHEVLSI VEQEGGEVVS VNLSTVGGKT FHTIHARVKI CRVGVETSRM RQRLQDTVYF 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021669836.1 | 5e-64 | transcription factor bHLH162-like | ||||
TrEMBL | A0A2P6P5W2 | 1e-60 | A0A2P6P5W2_ROSCH; Putative transcription factor bHLH family | ||||
STRING | Lus10042128 | 1e-129 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 5e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10042128 |