PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10042056

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

BBR-BPC

Protein Properties

Length: 295aa MW: 33094.6 Da PI: 9.8253

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10042056	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	298.4	2.7e-91	1	294	1	301
GAGA_bind 1 mdddgsre..rnkgyye................pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 mdd +++ r k yy+ ++ ++l ++++++s++aerda+i+ern+al+e+k+a+ +rd+a lqr++alaer+ al erd+ Lus10042056 1 MDDGEQHQngRCKDYYKaahnpwnitpqhqskeQQpNALV--MNKKILSILAERDAAIQERNIALAERKEALVARDEAILQREQALAERDIALRERDK 96 66665554589999**********99988763346676..99************************************************** PP GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 +++a++++e s++ + +k i + + l+ds v +++alpi++ + + +k +++k +k++++ ++k +e+ ++ Lus10042056 97 AFAAMQYRESSMNYS----------AKRIPHPVY---RSLNDSEVT-----NMDALPITTIPAGK----PPK--RSKKANKSPRKGNNKSVGEDLNRV 170 ***99985433..........355554444...345555444.....66788888754332....222..345667778888888888888888 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275 v + ++ ++ k+e++++d++ln +s+De+t+P+PvCsCtG+ +qCYkWGnGGWqS+CCttt+S +PLP+ +++r+aR++grKmS+++f+klL++La+e Lus10042056 171 VVRVTEGRKFKTEWDTLDVGLNLISYDEATMPAPVCSCTGTAHQCYKWGNGGWQSSCCTTTMSCHPLPQLPNKRHARVGGRKMSGSVFTKLLSRLAGE 268 888887799************************************************************************************* PP GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301 G+dl+ p+DLkd+WA+HGtn+++ti+ Lus10042056 269 GHDLAVPIDLKDYWARHGTNRYITIK 294 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.0E-91	1	294	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.6E-136	1	294	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDDGEQHQNG RCKDYYKAAH NPWNITPQHQ SKEQQPNALV MNKKILSILA ERDAAIQERN 60 IALAERKEAL VARDEAILQR EQALAERDIA LRERDKAFAA MQYRESSMNY SAKRIPHPVY 120 RSLNDSEVTN MDALPITTIP AGKPPKRSKK ANKSPRKGNN KSVGEDLNRV VVRVTEGRKF 180 KTEWDTLDVG LNLISYDEAT MPAPVCSCTG TAHQCYKWGN GGWQSSCCTT TMSCHPLPQL 240 PNKRHARVGG RKMSGSVFTK LLSRLAGEGH DLAVPIDLKD YWARHGTNRY ITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10042056

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021659561.1	1e-144	protein BASIC PENTACYSTEINE4-like
Refseq	XP_021659562.1	1e-144	protein BASIC PENTACYSTEINE4-like
Swissprot	Q8S8C6	1e-120	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A2P2KLL2	1e-144	A0A2P2KLL2_RHIMU; Uncharacterized protein MANES_11G081400
STRING	Lus10042056	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6974	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-123	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	Lus10042056