PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bZIP | ||||||||
Protein Properties | Length: 368aa MW: 41469.8 Da PI: 7.4071 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35 | 3.2e-11 | 84 | 115 | 3 | 34 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 ++k +rr+++NReAAr+sR+RKka++++Le Lus10042005 84 ADKTQRRLAQNREAARKSRLRKKAYVQQLESS 115 79***************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.7E-7 | 82 | 161 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-8 | 83 | 126 | No hit | No description |
PROSITE profile | PS50217 | 9.117 | 84 | 126 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.9E-8 | 84 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-7 | 86 | 128 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 89 | 104 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.2E-28 | 169 | 244 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MMSSPTTQLA ILRGMGIYEP FQQISSWATT DPFRGDNHIL NNITTAASLA VPVESAAPEN 60 KAENGSHEST EPYKSDQEAG GRPADKTQRR LAQNREAARK SRLRKKAYVQ QLESSRLKLA 120 QLEQELVRAR QQGVYINNSL DFGSSRTLNS GIATFEMEYA HWVGEQHKQV SELRRAMQAH 180 VGDVELRMLL ENGLNHFNNL FLMKADAARA DVFYLISGKW RTSVERFFLW IGGFRPSELL 240 NVLLPQLEPL TDPQHSEICT LRQSCQQAED ALSQGVEKLQ QTLSQSMAVD QSIAGSYRDQ 300 MAASIERLEG LEGFANQADH LRSQTLHHMS RILTTRQAAR FMLLLGEYFE RLHALSSLWS 360 ARPREPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU830862 | 0.0 | EU830862.1 Linum usitatissimum clone LU0032G12 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021656707.1 | 0.0 | transcription factor TGA7 | ||||
Refseq | XP_021656716.1 | 0.0 | transcription factor TGA7 | ||||
Swissprot | Q93ZE2 | 1e-149 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | B9RJD3 | 0.0 | B9RJD3_RICCO; Transcription factor TGA7, putative | ||||
STRING | Lus10042005 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1096 | 34 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 1e-141 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10042005 |
Publications ? help Back to Top | |||
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