PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041909
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 339aa    MW: 37182.2 Da    PI: 6.1373
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041909genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1944105257
                  T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+t+t++q+++L++ +++   r psae+++++++ l    +++ ++V++WFqN++a+e++
  Lus10041909  44 STRWTPTTDQIRILKDIYYNdgVRSPSAEQIQRISADLrkygKIEGKNVFYWFQNHKARERQ 105
                  58*****************8779*************************************97 PP
2Wus_type_Homeobox113.51.1e-3643107265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL+++y+  G+r+P++e+iqri+a L++yGkie+kNVfyWFQN+kaRerqk+
        Lus10041909  43 SSTRWTPTTDQIRILKDIYYnDGVRSPSAEQIQRISADLRKYGKIEGKNVFYWFQNHKARERQKK 107
                        789***************9769*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-1136109IPR009057Homeodomain-like
PROSITE profilePS5007110.38240106IPR001356Homeobox domain
SMARTSM003895.4E-542110IPR001356Homeobox domain
PfamPF000461.1E-1645105IPR001356Homeobox domain
CDDcd000864.26E-645107No hitNo description
Gene3DG3DSA:1.10.10.601.2E-645105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEQPQQLLNH HHNMDDGGNN NNSNNNGSAA KGGSGSSFLC RQSSTRWTPT TDQIRILKDI  60
YYNDGVRSPS AEQIQRISAD LRKYGKIEGK NVFYWFQNHK ARERQKKRFT NDPPTQQQQV  120
IIPQRANIVA NTTTTNLLNS SHNWKPTVAP QSSSGVFGIS QMGSYAGYGH QVTMEKSFRD  180
CSISSAGGSK VVGGGGGQYN YGLVGFDQCG GGSGGNYFFD HKMKSSSSTI HDHEAQVVAL  240
EDDDDDDDEY DDEDRTYNNH HQEIETLPLF PTHREDMIGG FYGGGIKQQY GSSSSSSAAA  300
YQWYGGDHCH DGGGATTTPF ALELSLNSFT GQYSSNMY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8851832e-41HQ885183.1 Linum usitatissimum clone Contig1041 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672272.11e-71protein WUSCHEL
TrEMBLM5VSN56e-69M5VSN5_PRUPE; Uncharacterized protein
STRINGLus100419090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-37WOX family protein