PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | AP2 | ||||||||
Protein Properties | Length: 365aa MW: 40369.6 Da PI: 9.3582 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.4e-16 | 36 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa a++ a++k++g Lus10041618 36 SVYRGVTRHRWTGRYEAHLWDkNSWNDsqnKKgRQVYLGAYDEEEAAAHAYDLAALKYWG 95 78*******************888855566446*************************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 138 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Lus10041618 138 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 189 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.58E-17 | 36 | 105 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-13 | 36 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.994 | 37 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-25 | 37 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-17 | 37 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-23 | 138 | 199 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 138 | 199 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-12 | 138 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-24 | 139 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 139 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 139 | 197 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 179 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAKMSKKTKG SEISNKSSGK RTRKSVPRDS PPKRSSVYRG VTRHRWTGRY EAHLWDKNSW 60 NDSQNKKGRQ VYLGAYDEEE AAAHAYDLAA LKYWGPHTIL NFPLETYDKE TMEMEGQSKE 120 EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY 180 DMAAIEYRGL NAVTNFDLSR YIHSLRPNGT QTPSTSNGDP TTPLVDEDIH SPFQDAVVVN 240 HLAAASPSPT HFFNHTASPA GSTTPSGIIS GSSGGSPSSS STTSALGLLL QSSKFKEMLE 300 RTSRSTATTT DSRPSTPAPE VSDHRLPRRS FPEDIQTYFG FGEEILLGNL NDYVSPIFHC 360 DLDG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041618 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024448435.1 | 1e-155 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_024452992.1 | 1e-155 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 6e-99 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2B973 | 1e-154 | A0A2K2B973_POPTR; Uncharacterized protein | ||||
STRING | Lus10041618 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 2e-91 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041618 |
Publications ? help Back to Top | |||
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