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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24171.8 Da PI: 9.0133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 12 | 60 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p +r++lg+f +ae+Aa+a+++a++ + Lus10041614 12 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFESAEDAARAYDEAARLMC 60 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-40 | 12 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-34 | 12 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-11 | 12 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.916 | 12 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 12 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-10 | 13 | 24 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-25 | 20 | 71 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MATRQQQQQQ QRYRGVRQRH WGSWVSEIRH PLLKTRIWLG TFESAEDAAR AYDEAARLMC 60 GPKARTNFPY SPAHDQAQAQ SSSTSTSSFL TGALAAKLHK CHMASLRRIP LSSAKKNNSK 120 SKPRHYTNTS SSNSTNAVKN EFAIDKHHEA AQCGGCGSRD RGRSWDDNGR GSLERGDQAT 180 AGEVGADDDI IIEQMIEELL DSGTSIELSL VTKHHPCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 11 | 69 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041614 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232223.1 | 2e-58 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A1J6KDP7 | 4e-57 | A0A1J6KDP7_NICAT; Ethylene-responsive transcription factor erf003 | ||||
STRING | Lus10041614 | 1e-163 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041614 |