PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 46105.6 Da PI: 4.9676 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.8 | 1.3e-13 | 159 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak..aaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+ a+++a+ k++g Lus10041595 159 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARssAYDRAAIKFRG 210 78*******************......55**********9999876789999999886 PP | |||||||
2 | AP2 | 43.4 | 8.4e-14 | 253 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + + k+++lg f+t+ eAa+a+++a+ k +g Lus10041595 253 SKYRGVTLHK-CGRWEARMGQF----LSkKYVYLGLFDTEVEAARAYDKAAIKCNG 303 89********.7******5553....235**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-13 | 159 | 219 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-6 | 159 | 209 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.82E-21 | 160 | 217 | No hit | No description |
PROSITE profile | PS51032 | 14.5 | 160 | 218 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-14 | 160 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-28 | 160 | 224 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-24 | 253 | 313 | No hit | No description |
Pfam | PF00847 | 2.7E-9 | 253 | 303 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-17 | 253 | 313 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.778 | 254 | 311 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-17 | 254 | 311 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-31 | 254 | 317 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 255 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 293 | 313 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MWDLNDSPDQ RIAEDASCSS QRTEEDATDK GKRVGSVSNS SSSGVPTPMD DGSDDEAGAL 60 MVRNKIFGFS VAGGEEEYEE EEEEDEEGIA SPVTRQFFPM EMGAPSVGEV GGGFPRAHWA 120 GVRFCQSESS AQRPVVGGGV EMGQQPLKKS RRGPRSRSSQ YRGVTYYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARSSA YDRAAIKFRG VEADINFSIE DYQDDLKQMN NLTKEEFVHV 240 LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLSKKYVY LGLFDTEVEA ARAYDKAAIK 300 CNGKDAVTNF DPSIYDDEFN TNYSLSGSSN ISAADHNLDL SLGNNIASSS SGMGPNPGSQ 360 NPGLLRPQLM RAYGSENTGS EEEQRRGSNE TEAVQLLSQT HIRSPPPHNF ISLDFQVVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041595 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ885939 | 1e-159 | HQ885939.1 Linum usitatissimum clone Contig1868 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079272.1 | 1e-154 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | P47927 | 1e-124 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | E6NU83 | 1e-153 | E6NU83_JATCU; JHL03K20.2 protein | ||||
STRING | Lus10041595 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-109 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041595 |