PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041475
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 500aa    MW: 55504.9 Da    PI: 7.4557
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041475genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.4e-10204245445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Lus10041475 204 QKTSRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQDL 245
                  5889*************************9888888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-9201267IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.393203247IPR004827Basic-leucine zipper domain
CDDcd147081.08E-21205256No hitNo description
SuperFamilySSF579591.81E-6205249No hitNo description
PfamPF001701.9E-7205246IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-7206235No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
PfamPF141444.4E-29285359IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MQTSSSHHHH HPIPSAMFRS SEMYSSSTPL LPPSFFFRGA AAQEEEEGSR VQTRFGDIGE  60
LDHHHHHPPQ PTFHHNHAFD LSPSSSSMFS LKSGNVVNAN IVPSSSSSLL LPSPFNTSIV  120
GCLDTGQQQY MYGKGTSSFG NIDNNNNWGD SNSGGMAADT TDTSTDVDTT DDRHHHHQQQ  180
LGGQHGSVVV VDSIDQSNCK VDDQKTSRRL AQNREAARKS RLRKKAYVQQ LENSRLKLTQ  240
LEQDLQRARQ QGNFTGDHGH SVAGNDALAF DMDYQRWLGE HQRLINDLRS AANYLTSDDK  300
LRILVDGVMS HYAEIFRLKS IAAKADVFHI LSGLWKTRAE RCFMWIGGFR SSELLKIVVN  360
QLKPLTDQQL VGICNLQQSS QQAEDALSQG MEALQQSLVD SLSSTSLRPG AAPGCRVNVA  420
DYMAQMAIAM GKLTTLENFL HQADLLRQQT LQQLHRILTT RQAANALLVI SDYTSRLRAL  480
SSLWLARPRN LNDRSTNVV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041475
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311449.20.0transcription factor TGA2.2 isoform X1
SwissprotQ415581e-154HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLB9HJ060.0B9HJ06_POPTR; Uncharacterized protein
STRINGLus100414750.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-123bZIP family protein