PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24547.5 Da PI: 6.154 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.9e-10 | 70 | 117 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a+ rEr RR+r+N++f+ L +l + + K++K +iL A++ +++L Lus10041148 70 AKACRERLRRERLNDRFQDLSAVLEPG---RPVKVDKPAILDDAIRALNQL 117 6789**********************8...89**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-13 | 64 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.836 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-7 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-8 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-12 | 73 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDPIDDTSCW DFLETFIEEP ASSSFLWPNN NNNSGSVEID FSSSGAVSQS QLKDSTRKRT 60 RSDSSSKPGA KACRERLRRE RLNDRFQDLS AVLEPGRPVK VDKPAILDDA IRALNQLKSE 120 AHELKETNEK LQEEIKSLKA EKNELREEKH TLKADKERME QQVKAMGVPP PSGYPSSYHA 180 GGTKMPMYPG YSLIPMWQYL PPAACDTSRD HELRPPAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 80 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041148 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021686383.1 | 1e-103 | transcription factor bHLH104-like isoform X1 | ||||
Swissprot | Q8L467 | 2e-67 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2C9UDS7 | 1e-101 | A0A2C9UDS7_MANES; Uncharacterized protein | ||||
STRING | Lus10041148 | 1e-161 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 2e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041148 |