PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10041001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 31448.8 Da PI: 6.6059 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT e d + +a + ++ + +W++Ia+ + g+tl+++k+++ Lus10041001 11 SWTREQDSAFENALATYPEDdsdRWEKIAAGVE-GKTLEEVKDHF 54 7********************************.**********8 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6e-14 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Lus10041001 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.719 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 9.3E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-7 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-8 | 11 | 58 | No hit | No description |
SuperFamily | SSF46689 | 2.44E-10 | 11 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-4 | 11 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.61 | 114 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-17 | 117 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 119 | 169 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-17 | 119 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.3E-11 | 122 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-12 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-10 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MAVDEVGSSC SWTREQDSAF ENALATYPED DSDRWEKIAA GVEGKTLEEV KDHFDLLLED 60 IGLIESGCVP LPSYNSSSES STSHGGDEGT GKKGGHGGNN NSESNQGNKG SRADQERRKG 120 IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS 180 SIHDITSLNN GEIAAAQGPI TGQTNGASAG VGGSGKSGKQ PSQHPGGPPG VVGIYGAPTI 240 GQPIGGPLVS AVGTPVNLAS PAHMAYGVRA PVPGAMVPGA PMTMGGPMAY PMPPTTSAHR 300 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 7 | 77 | 6 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10041001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008360003.2 | 1e-171 | transcription factor DIVARICATA-like isoform X1 | ||||
Refseq | XP_008360005.2 | 1e-171 | transcription factor DIVARICATA-like isoform X1 | ||||
Refseq | XP_017184585.2 | 1e-171 | transcription factor DIVARICATA-like isoform X1 | ||||
Refseq | XP_017184586.2 | 1e-171 | transcription factor DIVARICATA-like isoform X1 | ||||
Refseq | XP_028946697.1 | 1e-171 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q9FNN6 | 1e-122 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | D9ZJ78 | 1e-169 | D9ZJ78_MALDO; MYBR domain class transcription factor | ||||
STRING | Lus10041001 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4694 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08520.1 | 5e-94 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10041001 |
Publications ? help Back to Top | |||
---|---|---|---|
|