PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040945
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 359aa    MW: 39158.3 Da    PI: 7.2218
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040945genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-3180133255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtp+LH +F++av+ LGG+++AtPk +lelm++kgL+++hvkSHLQ+YR+
  Lus10040945  80 PRLRWTPDLHLCFINAVDTLGGQDRATPKLVLELMNIKGLSIAHVKSHLQMYRS 133
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.99776136IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2976134IPR009057Homeodomain-like
SuperFamilySSF466895.91E-1478134IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-2380135IPR006447Myb domain, plants
PfamPF002492.5E-881132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGSSSRHPDG NSSKSSFLSN TDAFTSEDEQ EEEEDEEGEA GSDCDVISTN SSVDDEEKKK  60
AAAGNSSGGC VRKYNRSKMP RLRWTPDLHL CFINAVDTLG GQDRATPKLV LELMNIKGLS  120
IAHVKSHLQM YRSKKLDDPD QGQHQGLLLQ GKDTHVYNLS QLPMLRTFNQ TTSSTPFRYG  180
DGNGRSGHQM YGKHYIGEGG GGGGVNRSKQ GSPYYGYKQN PFGTSSSQVS IHRLTHHHLL  240
QVSSKLLSRP SWPAQITKPI TTTMESTKTF GNHNNNDGIL KRKTREPDDD DHLNDLDLNL  300
SLKVKAAKIV DEEAAAAPTS RILQKEVDQG STTTSLSLSL SSSSKCTRMA ASTLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1881135357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084429.16e-66myb family transcription factor PHL8 isoform X2
TrEMBLA0A067LJD02e-57A0A067LJD0_JATCU; Uncharacterized protein
STRINGLus100409450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-40G2-like family protein