PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10040940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 24852 Da PI: 7.1324 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.1e-19 | 7 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Lus10040940 7 KGSWSPQEDATLIKLVQQHGPRNWSLISTGVP-GRSGKSCRLRWCNQ 52 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.7e-18 | 61 | 102 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ Ed l+v+a++++G++ W+tIar ++ gRt++ +k++w++ Lus10040940 61 PFTPSEDALIVRAHALHGNK-WATIARLLP-GRTDNAIKNHWNS 102 89******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.151 | 2 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-30 | 4 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-16 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-19 | 7 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.91E-15 | 9 | 51 | No hit | No description |
SMART | SM00717 | 8.0E-15 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.888 | 58 | 108 | IPR017930 | Myb domain |
CDD | cd00167 | 2.05E-12 | 61 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 61 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-15 | 61 | 102 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MASDRIKGSW SPQEDATLIK LVQQHGPRNW SLISTGVPGR SGKSCRLRWC NQLSPDVQHR 60 PFTPSEDALI VRAHALHGNK WATIARLLPG RTDNAIKNHW NSALRRKRAT EFSESNSAVK 120 RASPLAAESD GESGSGKKMC LRPEEKNTGA SNEYQGEIIG GGPETSLTLS PPGDGIVVTG 180 EEEIKEEEEV EEKGSKWLKG KMEESGLLEI MQRMIAEEVR TYLLH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-38 | 6 | 107 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-37 | 6 | 107 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-37 | 6 | 107 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-38 | 6 | 107 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-38 | 6 | 107 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10040940 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090668.1 | 1e-90 | transcription factor MYB25 | ||||
TrEMBL | A0A067LKB3 | 3e-89 | A0A067LKB3_JATCU; MYB family protein | ||||
STRING | Lus10040940 | 1e-164 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-55 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10040940 |