PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040921

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 1148aa MW: 125931 Da PI: 7.2764

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040921	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.5e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e++++ ++t +qV+ +F +R + ++ Lus10040921 69 KRPRDLLNPKAIKYMQAVFSIKDAISKKESREISAQFSITVTQVREFFTSQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.106	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-6	67	128	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-4	68	130	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-4	69	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.9E-6	69	129	IPR009057	Homeodomain-like
CDD	cd00086	0.00588	69	116	No hit	No description
Gene3D	G3DSA:1.20.930.10	2.7E-5	293	381	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	1.54E-5	293	384	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1148 aa Download sequence Send to blast
MAGLKEDFAE MEIGTTAASF QRFMDSQKDL FHSQVDQLQR IVVTQCKLTG VNPLSQEMAA 60 GALSINIGKR PRDLLNPKAI KYMQAVFSIK DAISKKESRE ISAQFSITVT QVREFFTSQR 120 SRVRRLVRLA REKGIQANSL KEPENNLQID GIPRGSNSVS LNLIVPDTVP ASSNGPTDVT 180 SSTACPYTAP LRSVGPNSVP LTAANLNPEI RTSVGSDYIP LNCITPDSEP LLSEGPANCE 240 GGQFFSKQEE ILPGLDDSEK HFVETIFGLL KREETFGGQV KLMEWVLQIQ NLTVLNWFLT 300 EGGVMILATW LTQAAAEEQT SVLLVALRVL CHLPLHNAFP EHMSAILHSV NTLRFYRTSD 360 ISSRARILLA KWTKLFARSQ SLRKPNGVGS SIDAQDMILK KSIDEIMSNG FSQTDIGYTE 420 GSLALPSGNS VNIRRMESSQ TMKLLPASSD DSSRKYILGS PSRFVYFFVS SLLIIWTSIE 480 MIHPDPIREL VADTRERRKV QLVEQPGQKP SSRSPQGAKS GSTSQGRPMS ADDIQKAKMR 540 ALYMQSKYGR KSNLSNGSNS MKNGIVDKMP PVSIGSSSQV SKVLAKLKNE EPKEPVIAAA 600 PTSICKGEHL DNTMLKVESQ VVSKARAEPT NEEPKERVIA AAPMSICKTE HPDTTMLKVE 660 STVFSKALAE PKDEEVKEPV ISTPKSTCKD EHQHATEQKV ASNMPVKQIC SRPQIRWHSP 720 TEVKLDVEWR VGTGEFSKEV EVQKNRNRRE METIYRAVNE IPSNPKEPWD LDMDYDDSLT 780 PEIPIEQQPD ADGTDTQIPD NQLENPVAAA PTMANGGVAA VAEPDLELLA VLLKNPALVF 840 ALTSGQAGNL SSDDTVRLLE MMKTGGIALG NSVNESDGKV GEVSLPSPTP SSNNPRTSGW 900 KPEVARNPFS QRNPLGNGGR AAGFVDTTTV TSSVHPENRV TTNMGFLPQK HSHEQYYHHQ 960 SFTDHPRIQT STSDSPSTSF VDRHHTRFQQ PSLSSATLLH QQTYMSNESS YLSRPVAGNV 1020 VNVGRGSPAA ASNDSWRVRQ GSVVASNSYS SNVVNQNLYN GTSTSYGGNQ SRAGHLQYGA 1080 AGFESWGPEN SHCNTDRSSS EQVVGRGLGG RRGSEWPDDN QRPTRHRNLA SSSGFQDHDS 1140 NNNRRWP*

Sequence ? help Back to Top

Protein Sequence Length: 1148 aa Download sequence Send to blast

MAGLKEDFAE MEIGTTAASF QRFMDSQKDL FHSQVDQLQR IVVTQCKLTG VNPLSQEMAA  60
GALSINIGKR PRDLLNPKAI KYMQAVFSIK DAISKKESRE ISAQFSITVT QVREFFTSQR  120
SRVRRLVRLA REKGIQANSL KEPENNLQID GIPRGSNSVS LNLIVPDTVP ASSNGPTDVT  180
SSTACPYTAP LRSVGPNSVP LTAANLNPEI RTSVGSDYIP LNCITPDSEP LLSEGPANCE  240
GGQFFSKQEE ILPGLDDSEK HFVETIFGLL KREETFGGQV KLMEWVLQIQ NLTVLNWFLT  300
EGGVMILATW LTQAAAEEQT SVLLVALRVL CHLPLHNAFP EHMSAILHSV NTLRFYRTSD  360
ISSRARILLA KWTKLFARSQ SLRKPNGVGS SIDAQDMILK KSIDEIMSNG FSQTDIGYTE  420
GSLALPSGNS VNIRRMESSQ TMKLLPASSD DSSRKYILGS PSRFVYFFVS SLLIIWTSIE  480
MIHPDPIREL VADTRERRKV QLVEQPGQKP SSRSPQGAKS GSTSQGRPMS ADDIQKAKMR  540
ALYMQSKYGR KSNLSNGSNS MKNGIVDKMP PVSIGSSSQV SKVLAKLKNE EPKEPVIAAA  600
PTSICKGEHL DNTMLKVESQ VVSKARAEPT NEEPKERVIA AAPMSICKTE HPDTTMLKVE  660
STVFSKALAE PKDEEVKEPV ISTPKSTCKD EHQHATEQKV ASNMPVKQIC SRPQIRWHSP  720
TEVKLDVEWR VGTGEFSKEV EVQKNRNRRE METIYRAVNE IPSNPKEPWD LDMDYDDSLT  780
PEIPIEQQPD ADGTDTQIPD NQLENPVAAA PTMANGGVAA VAEPDLELLA VLLKNPALVF  840
ALTSGQAGNL SSDDTVRLLE MMKTGGIALG NSVNESDGKV GEVSLPSPTP SSNNPRTSGW  900
KPEVARNPFS QRNPLGNGGR AAGFVDTTTV TSSVHPENRV TTNMGFLPQK HSHEQYYHHQ  960
SFTDHPRIQT STSDSPSTSF VDRHHTRFQQ PSLSSATLLH QQTYMSNESS YLSRPVAGNV  1020
VNVGRGSPAA ASNDSWRVRQ GSVVASNSYS SNVVNQNLYN GTSTSYGGNQ SRAGHLQYGA  1080
AGFESWGPEN SHCNTDRSSS EQVVGRGLGG RRGSEWPDDN QRPTRHRNLA SSSGFQDHDS  1140
NNNRRWP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040921

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10040921	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Lus10040921