PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040906
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 792aa    MW: 88091.8 Da    PI: 6.8422
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040906genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.9e-22202302198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd++k+g +++p++ aee+       +++    +++  +d + + W++++iyr+ ++r++lt+GW+ F+ ++++  gD ++F   + +++e
  Lus10040906 202 FSKKLTPSDTSKHGGFSVPRRQAEEClpplnmsEEP--PVQEIAAKDIHDNLWRFRHIYRGDPKRHLLTSGWSTFATSKRISPGDQFIFV--RGENGE 295
                  88****************************964444..4458************************************************..449999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Lus10040906 296 LRVGVRR 302
                  *****98 PP
2Auxin_resp87.72.3e-29334419183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t+s+F v+Y+P++ +seF v++ +++k+ k+++s+GmRfkm fe++++ e+r+    Gt+vg   +dp++W++S+W  Lk
  Lus10040906 334 ASHAVTTGSTFVVYYRPWSNSSEFLVPAGRYLKSAKIEYSPGMRFKMLFEGDECTEQRVerfEGTIVGNDPVDPLHWHDSEWERLK 419
                  789****************************************************99887779*******************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-31193308IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-35195313IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-20200302No hitNo description
PROSITE profilePS5086311.843202304IPR003340B3 DNA binding domain
SMARTSM010199.0E-21202304IPR003340B3 DNA binding domain
PfamPF023625.7E-19202303IPR003340B3 DNA binding domain
PfamPF065077.1E-26334419IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MLGRTKRMIM RSIDQVQAPL INSIYAAGGH HRHASAAVAA AHLTRKRCIQ RRSPPTRVNN  60
VPPQTSSQSG DQDGLLDELW QACAGPLAYV PKVGDYVYYF LQGHIQQVKS CIEQDCEMDL  120
PRGNSVPSKL LCRVVDVQRK AEAVTDEVFA RIVLLPVLEP PDEEVISGSW KEEEDDDDED  180
GSSNSNQSWN KLIRSKNSKR SFSKKLTPSD TSKHGGFSVP RRQAEECLPP LNMSEEPPVQ  240
EIAAKDIHDN LWRFRHIYRG DPKRHLLTSG WSTFATSKRI SPGDQFIFVR GENGELRVGV  300
RRGGRQLQQH QKKPPPSATV ISANCILHGI LADASHAVTT GSTFVVYYRP WSNSSEFLVP  360
AGRYLKSAKI EYSPGMRFKM LFEGDECTEQ RVERFEGTIV GNDPVDPLHW HDSEWERLKV  420
KWDTTSDTLE RPERVSSWNI DPIEPVQMKL PTPFGRHLKR NRDFLFNPTA SGFNATNPFK  480
ENFITAAGML RNPFFPQSLN LEAFQEQNKK RKTQQELPDP KSPITIPHWL KLYSTASTNP  540
NLPPNFPLIP NQQRQGQGEA AWTEMDHDGL SPTAPPAKTN FSVGPPGDKY YSSSSSSSSS  600
QGRKEDDGNE ALLASPPHQH EADKRKCMVF GVNILSNIIE TEFPSPQIVT VTTDDLSEST  660
PAAADQCLSN SDIIVLPLTS QHSSGGGSET ISYTPAAAAT TIPPNSTTCS IIIKVLKHGS  720
QLGRLVDLAQ FNGHDQLVRE LDRMFGFRGS LVDGGSGWHV TFVDAADSQH HHDSTSEIMF  780
PIADRQWQLS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1147344317355Auxin response factor 1
4ldw_A1e-1147344317355Auxin response factor 1
4ldw_B1e-1147344317355Auxin response factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8873731e-176HQ887373.1 Linum usitatissimum clone GMU2AYZ01AZ07G microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100409060.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.33e-98auxin response factor 2