PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 20204.2 Da PI: 5.3167 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E++l v++++++G++ W++Iar+++ gRt++++k++w++++ Lus10040861 2 TPQEEKLVVELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 8.65E-13 | 1 | 43 | No hit | No description |
SMART | SM00717 | 7.7E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.019 | 1 | 47 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-12 | 2 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MTPQEEKLVV ELHAKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER KRALSPSSPS 60 NNSSVSNTTT VDSSPFQETG DRSFYDTGGN NQVVVAAAAG KTNDSMQVGD KGYSMDDIWK 120 DIENTIEPVS SAGFNDNFSG PSIVSPPWEY NFHDTLWKLD EEESKAFLPY DYGTVFLTG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040861 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ374577 | 0.0 | GQ374577.1 Linum usitatissimum MYB1-1 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582037.1 | 9e-76 | transcription factor MYB59 isoform X2 | ||||
Swissprot | Q9LX82 | 6e-43 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | C8CAM6 | 1e-130 | C8CAM6_LINUS; MYB1-1 | ||||
STRING | Lus10040861 | 1e-131 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-43 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Lus10040861 |