PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040787
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 646aa    MW: 73549.1 Da    PI: 6.6158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.94.3e-1142706393374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cA+av+s+d++ +++lL+++++++s  gd +qR+a+yf++AL++r a+  +  y  + ++ ++   ++e l+a+++f + sP+ ++s++ aN+
  Lus10040787 270 TLLTQCAQAVASSDQRTTNELLKQIRQHSSDLGDGNQRMAHYFANALETRFAGAATPKYT-VDVKGKT--PMAEILKAYQMFLNSSPFKRMSNFFANR 364
                  69***************************************************5555553.3333333..39************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  ++ + +e+ + +HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rLa+++e+++vpf++++ +a+++e++++e+L++
  Lus10040787 365 TVFNLAENVSSLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIDFPQPGfrPTERVEETGRRLARYCERFNVPFDYKA-IAQKWETIKYEDLNI 461
                  ****************************************************9*****************************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +p+E+++Vn+ +++ +l+d++v+++s+rd+vL l+ +++P+v+++   + ++n++ F +rf eal +ys+lfd++ea+l re+e+r   Ere+ gr+i
  Lus10040787 462 NPDETTVVNCLYRMRNLPDDTVAVDSARDSVLGLIHRVRPEVFIHGIANGSYNAPFFTTRFREALFHYSSLFDMFEATLQREDEHRLLFEREMYGRDI 559
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg+er+er et+++W+ r ++aGF+++pl+e++ k++++ ++  +++ + v+ ++ ++++gWk+r ++ +S+W+
  Lus10040787 560 MNVVACEGSERVERPETYKQWQTRNTRAGFRQLPLNETILKKVRSTVKSEYDKDFGVDADRRWMLQGWKGRIIYGLSVWK 639
                  ***************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.379242619IPR005202Transcription factor GRAS
PfamPF035141.5E-111270639IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MNSLLHEIPN SINAFKFKHP SIPFNNGYNR FANPDPPPSD SSPSSSSSSS SSVLSPSASN  60
SEGDYPNNNA VLKYIHDILL EEDLEGKSCM YQDCFALQAA EKSLYDALGQ EYPQSSSPPC  120
RSGQTTRSDQ VPDIAEFGFR GSDFRAEVKP FSVGWTENLI SDDSSSFKPS IFAADRDLSP  180
DSQNRKNHVH ERDELGFDSV EEERSNKQSA VSRDDDEPEN TKMLDEVLLC SCKQVCTARG  240
HGHHHPEKKN GRGRKNSNNN KRGEVVDLWT LLTQCAQAVA SSDQRTTNEL LKQIRQHSSD  300
LGDGNQRMAH YFANALETRF AGAATPKYTV DVKGKTPMAE ILKAYQMFLN SSPFKRMSNF  360
FANRTVFNLA ENVSSLHIID FGILYGFQWP CLIQRLSERP GGPPKLRITG IDFPQPGFRP  420
TERVEETGRR LARYCERFNV PFDYKAIAQK WETIKYEDLN INPDETTVVN CLYRMRNLPD  480
DTVAVDSARD SVLGLIHRVR PEVFIHGIAN GSYNAPFFTT RFREALFHYS SLFDMFEATL  540
QREDEHRLLF EREMYGRDIM NVVACEGSER VERPETYKQW QTRNTRAGFR QLPLNETILK  600
KVRSTVKSEY DKDFGVDADR RWMLQGWKGR IIYGLSVWKP VDKDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4727464025380Protein SCARECROW
5b3h_A2e-4727464024379Protein SCARECROW
5b3h_D2e-4727464024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040787
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533749.10.0scarecrow-like protein 14
RefseqXP_021642549.10.0scarecrow-like protein 14
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLB9T6800.0B9T680_RICCO; Transcription factor, putative
STRINGLus100407870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein