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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040569 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 41498.5 Da PI: 6.8642 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.4 | 2.2e-30 | 173 | 227 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+ F+eav+ LGG+++AtPk+il +m+v+gL ++hvkSHLQkYRl Lus10040569 173 KQRIRWTTELHDLFLEAVTTLGGPDVATPKRILSIMNVEGLNIYHVKSHLQKYRL 227 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 170 | 231 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-17 | 170 | 230 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.508 | 170 | 230 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.6E-25 | 173 | 228 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 177 | 226 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-15 | 258 | 303 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MVLYNKATNP PNGSSFHFQG SLLSTPPHCT IFCTGFHSTS GISAFIPPLQ RPIISDHHQV 60 NNYNNNSADM PSLVLDDHSM KNLDDLLHMT EENSNFHPLM HPHAAKDVVS MTLKETMGYL 120 SKELDIPLDD VVDNNDKPAA GLEEIFEQPT AGNKDDYMSG SSHQNSEGVT SHKQRIRWTT 180 ELHDLFLEAV TTLGGPDVAT PKRILSIMNV EGLNIYHVKS HLQKYRLQTQ EKRIPSAVEK 240 KSASSNNDSQ GNMNRNMVVT TALQMQIDVQ KLLHDQLKAQ KLLQLRIEQN GEFLKKLLEE 300 QQKLTPRSRL NSPSSSSQLE LSHYADVSSP SPQNSTPLLL TTHNNSSQLL SNHQTDSTNS 360 KCHKRLRDDR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 173 | 226 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040569 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10040569 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17035 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-39 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10040569 |