PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040506
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 357aa    MW: 39261.9 Da    PI: 6.519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040506genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.7e-08209256455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++ Lq
  Lus10040506 209 SHSLAERARREKINARMKFLQELVPGC----SKISGTALVLDEIINHVQTLQ 256
                  8*************************9....556666777777777777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-15203274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-8203260No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14205273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.094205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5209256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-6211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
METLSGAGAR SGPAANETAA LDFGDDIRHL IISAPNETES SFTALLELPP NQAMKLLHDP  60
SRPGAEQQYR SHHTNRQLPQ QFNAELLTFP TNAALIERAA KFSVFAAEED MRKSTTATID  120
PSPNDDDDSC SNVLGKAVVV KSEPAETRLN SSPTVAKNDE NRRQGAKRKE QERKVKASSK  180
KSKCNTKEDS GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKFLQE LVPGCSKISG  240
TALVLDEIIN HVQTLQRQVE VLSMKLAAVN PRIDFNLDAI LAAESGSLTE SNFPAIMMPI  300
LWPAEVQGSE NMQQYHQWTF DATHPQAWGR ENSHNFVMTP ENSLLSYVSS ANSDGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621235.11e-122transcription factor bHLH48-like
SwissprotQ8VZ021e-87BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2C9VDG61e-121A0A2C9VDG6_MANES; Uncharacterized protein
STRINGLus100405060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-89bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]