PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 39261.9 Da PI: 6.519 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.5 | 9.7e-08 | 209 | 256 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++ Lq Lus10040506 209 SHSLAERARREKINARMKFLQELVPGC----SKISGTALVLDEIINHVQTLQ 256 8*************************9....556666777777777777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-15 | 203 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-8 | 203 | 260 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-14 | 205 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.094 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-5 | 209 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-6 | 211 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
METLSGAGAR SGPAANETAA LDFGDDIRHL IISAPNETES SFTALLELPP NQAMKLLHDP 60 SRPGAEQQYR SHHTNRQLPQ QFNAELLTFP TNAALIERAA KFSVFAAEED MRKSTTATID 120 PSPNDDDDSC SNVLGKAVVV KSEPAETRLN SSPTVAKNDE NRRQGAKRKE QERKVKASSK 180 KSKCNTKEDS GEKLPYVHVR ARRGQATDSH SLAERARREK INARMKFLQE LVPGCSKISG 240 TALVLDEIIN HVQTLQRQVE VLSMKLAAVN PRIDFNLDAI LAAESGSLTE SNFPAIMMPI 300 LWPAEVQGSE NMQQYHQWTF DATHPQAWGR ENSHNFVMTP ENSLLSYVSS ANSDGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040506 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621235.1 | 1e-122 | transcription factor bHLH48-like | ||||
Swissprot | Q8VZ02 | 1e-87 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A2C9VDG6 | 1e-121 | A0A2C9VDG6_MANES; Uncharacterized protein | ||||
STRING | Lus10040506 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10040506 |
Publications ? help Back to Top | |||
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